myRT

myRT report for GCA_001906045.1_ASM190604v1

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Seq: LPTH01000149.1 Shigella boydii strain 602385 602385_150, whole genome shotgun sequence (10725 bp)
Overview 1 RT 1: 3-5015 bp Neighborhood of RT #1 [3, 5017] Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 3-542 bp Feature: domain Description: Caudo_TAP Location: 174-531 bp Feature: domain Description: Caudo_TAP Location: 1 74-531 bp Feature: gene Location: 987-2591 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1278-1869 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 278-1 869 bp Feature: domain Description: TIR_2 Location: 2196-2484 bp Feature: domain Description: TIR_2 Location: 21 96-2484 bp Feature: gene Location: 2951-3211 bp Feature: domain Description: PRK10597 Location: 2954-3194 bp Feature: domain Description: PRK1 0597 Location: 2954-31 94 bp Feature: gene Location: 3431-5017 bp Feature: domain Description: prfC Location: 3449-5015 bp Feature: domain Description: prfC Location: 3449-501 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676)

Seq: LPTH01000274.1 Shigella boydii strain 602385 602385_275, whole genome shotgun sequence (2454 bp)
Overview 1 RT 1: 3-2070 bp Neighborhood of RT #1 [3, 2147] zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM Feature: gene Location: 3-452 bp Feature: domain Description: zf-IS66 Location: 9-87 bp Feature: domain Description: zf-IS66 Location: 9-87 bp Feature: domain Description: DDE_Tnp_IS66 Location: 132-426 bp Feature: domain Description: DDE_Tnp_IS66 Location: 132 -42 6 bp Feature: gene Location: 1014-2147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1116-1770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1116-1770 bp Feature: domain Description: GIIM Note: maturase Location: 1848-2070 bp Feature: domain Description: GIIM Note: maturase Location: 1848-2 070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)

Seq: LPTH01000332.1 Shigella boydii strain 602385 602385_333, whole genome shotgun sequence (919 bp)
Overview 1 RT 1: 130-823 bp Neighborhood of RT #1 [130, 825] RVT-GII Feature: gene Location: 130-825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430-823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 0-823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII