myRT

myRT report for GCA_001906115.1_ASM190611v1

Download annotations/find similar RTs

Seq: LSCA01000187.1 Shigella boydii strain 600657 600657_188, whole genome shotgun sequence (7454 bp)
Overview 1 RT 1: 4401-7055 bp Neighborhood of RT #1 [4401, 7055] COG3547 RVT-GII GIIM Feature: gene Location: 4401-4886 bp Feature: domain Description: COG3547 Location: 4419-4872 bp Feature: domain Description: COG3547 Location: 441 9-4872 bp Feature: gene Location: 4982-5149 bp Feature: gene Location: 5175-6392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5361-6015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5361 -601 5 bp Feature: domain Description: GIIM Note: maturase Location: 6093-6315 bp Feature: domain Description: GIIM Note: maturase Location: 6093-631 5 bp Feature: gene Location: 6403-6822 bp Feature: gene Location: 6861-7055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LSCA01000320.1 Shigella boydii strain 600657 600657_321, whole genome shotgun sequence (2942 bp)
Overview 1 RT 1: 515-2941 bp Neighborhood of RT #1 [515, 2940] PAP2_acid_phosphatase Tra5 RVT-GII InsE Feature: gene Location: 515-1264 bp Feature: domain Description: PAP2_acid_phosphatase Location: 590-1244 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 590-12 44 bp Feature: gene Location: 1639-1860 bp Feature: domain Description: Tra5 Location: 1651-1843 bp Feature: domain Description: Tra5 Location: 1651-1843 bp Feature: gene Location: 1873-2568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2173-2566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 173-2 566 bp Feature: gene Location: 2620-2940 bp Feature: domain Description: InsE Location: 2623-2941 bp Feature: domain Description: InsE Location: 2 62 3-2 941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, InsE (COG2963), PAP2_acid_phosphatase (cd03397)