myRT

myRT report for GCA_001906135.1_ASM190613v1

Download annotations/find similar RTs

Seq: LPTQ01000146.1 Shigella boydii strain 600690 600690_147, whole genome shotgun sequence (7723 bp)
Overview 1 RT 1: 2-2801 bp Neighborhood of RT #1 [2, 2824] InsE PHA02517 RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 2-229 bp Feature: domain Description: InsE Location: 11-227 bp Feature: domain Description: InsE Location: 1 1 -227 bp Feature: gene Location: 276-641 bp Feature: domain Description: PHA02517 Location: 306-639 bp Feature: domain Description: PHA0251 7 Location: 306-639 bp Feature: gene Location: 1428-2315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1530-2184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 530-21 84 bp Feature: gene Location: 2251-2562 bp Feature: domain Description: GIIM Note: maturase Location: 2269-2485 bp Feature: domain Description: GIIM Note: maturase Location: 2269-2485 bp Feature: gene Location: 2678-2824 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2690-2801 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2690-2801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LPTQ01000164.1 Shigella boydii strain 600690 600690_166, whole genome shotgun sequence (4707 bp)
Overview 1 RT 1: 2100-4535 bp Neighborhood of RT #1 [2100, 4705] RVT-GII GIIM RVT-GII Feature: gene Location: 2100-2342 bp Feature: gene Location: 2514-2669 bp Feature: gene Location: 2695-3222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2701-2845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 701-2 845 bp Feature: domain Description: GIIM Note: maturase Location: 2929-3145 bp Feature: domain Description: GIIM Note: maturase Location: 2 92 9-3145 bp Feature: gene Location: 3232-3417 bp Feature: gene Location: 3521-4705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3878-4535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3878-4535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LPTQ01000052.1 Shigella boydii strain 600690 600690_53, whole genome shotgun sequence (30544 bp)
Overview 1 RT 1: 25385-30423 bp Neighborhood of RT #1 [25385, 30434] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Feature: gene Location: 25385-26971 bp Feature: domain Description: prfC Location: 25403-26969 bp Feature: domain Description: prfC Location: 25403 -26969 bp Feature: gene Location: 27191-27451 bp Feature: domain Description: PRK10597 Location: 27194-27434 bp Feature: domain Description: PRK10597 Location: 27194-2743 4 bp Feature: gene Location: 27813-29417 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28104-28695 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28104-28695 bp Feature: domain Description: TIR_2 Location: 29022-29310 bp Feature: domain Description: TIR_2 Location: 29022-293 10 bp Feature: gene Location: 29862-30434 bp Feature: domain Description: Caudo_TAP Location: 30066-30423 bp Feature: domain Description: Caudo_TAP Location: 3 0066-3 0423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413)

Seq: LPTQ01000098.1 Shigella boydii strain 600690 600690_99, whole genome shotgun sequence (42735 bp)
Overview 1 RT 1: 2-3336 bp Neighborhood of RT #1 [2, 3338] RVT-Retrons PRK10597 prfC Feature: gene Location: 2-910 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 293-884 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 293-884 bp Feature: gene Location: 1272-1532 bp Feature: domain Description: PRK10597 Location: 1275-1515 bp Feature: domain Description: PRK10597 Location: 1275-1515 bp Feature: gene Location: 1752-3338 bp Feature: domain Description: prfC Location: 1770-3336 bp Feature: domain Description: prfC Location: 1770-3336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), RVT-Retrons