myRT

myRT report for GCA_001906195.1_ASM190619v1

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Seq: LPTJ01000155.1 Shigella boydii strain 602144 602144_156, whole genome shotgun sequence (7454 bp)
Overview 1 RT 1: 1-3040 bp Neighborhood of RT #1 [1, 3054] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-360 bp Feature: domain Description: PHA02517 Location: 4-358 bp Feature: domain Description: PHA0251 7 Location: 4-358 bp Feature: gene Location: 454-585 bp Feature: domain Description: DDE_Tnp_IS66 Location: 466-559 bp Feature: domain Description: DDE_Tnp_IS66 Location: 466-559 bp Feature: gene Location: 1147-2280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249-1903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 249-1 903 bp Feature: domain Description: GIIM Note: maturase Location: 1981-2203 bp Feature: domain Description: GIIM Note: maturase Location: 1 981 -2203 bp Feature: gene Location: 2396-2542 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2408-2519 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2408-251 9 bp Feature: gene Location: 2569-3054 bp Feature: domain Description: COG3547 Location: 2587-3040 bp Feature: domain Description: COG3547 Location: 2587-3040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050)

Seq: LPTJ01000386.1 Shigella boydii strain 602144 602144_388, whole genome shotgun sequence (1386 bp)
Overview 1 RT 1: 362-1289 bp Neighborhood of RT #1 [362, 1291] Tra5 RVT-GII Feature: gene Location: 362-583 bp Feature: domain Description: Tra5 Location: 374-566 bp Feature: domain Description: Tra5 Location: 374-566 bp Feature: gene Location: 596-1291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 896-1289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 896-12 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII