myRT

myRT report for GCA_001906275.1_ASM190627v1

Download annotations/find similar RTs

Seq: LPTG01000191.1 Shigella boydii strain 602404 602404_192, whole genome shotgun sequence (7416 bp)
Overview 1 RT 1: 4401-7055 bp Neighborhood of RT #1 [4401, 7055] COG3547 RVT-GII GIIM Feature: gene Location: 4401-4886 bp Feature: domain Description: COG3547 Location: 4419-4872 bp Feature: domain Description: COG3547 Location: 441 9-4872 bp Feature: gene Location: 4982-5149 bp Feature: gene Location: 5175-6392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5361-6015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5361 -601 5 bp Feature: domain Description: GIIM Note: maturase Location: 6093-6315 bp Feature: domain Description: GIIM Note: maturase Location: 6093-631 5 bp Feature: gene Location: 6403-6822 bp Feature: gene Location: 6861-7055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LPTG01000328.1 Shigella boydii strain 602404 602404_329, whole genome shotgun sequence (2784 bp)
Overview 1 RT 1: 636-2687 bp Neighborhood of RT #1 [636, 2689] PAP2_acid_phosphatase Tra5 RVT-GII Feature: gene Location: 636-1385 bp Feature: domain Description: PAP2_acid_phosphatase Location: 711-1365 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 711-1365 bp Feature: gene Location: 1760-1981 bp Feature: domain Description: Tra5 Location: 1772-1964 bp Feature: domain Description: Tra5 Location: 1772 -1964 bp Feature: gene Location: 1994-2689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2294-2687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 94-2 687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397)