myRT

myRT report for GCA_001906345.1_ASM190634v1

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Seq: LPSZ01000053.1 Shigella boydii strain 603233 603233_55, whole genome shotgun sequence (7074 bp)
Overview 1 RT 1: 3659-6344 bp Neighborhood of RT #1 [3659, 6344] COG3547 RVT-GII GIIM Acetyltransf_10 Feature: gene Location: 3659-4144 bp Feature: domain Description: COG3547 Location: 3677-4130 bp Feature: domain Description: COG3547 Location: 3677-41 30 bp Feature: gene Location: 4240-4431 bp Feature: gene Location: 4432-5637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4606-5260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4606-5260 bp Feature: domain Description: GIIM Note: maturase Location: 5338-5560 bp Feature: domain Description: GIIM Note: maturase Location: 5338-5560 bp Feature: gene Location: 5644-6129 bp Feature: domain Description: Acetyltransf_10 Location: 5779-6094 bp Feature: domain Description: Acetyltransf_1 0 Location: 5779-6094 bp Feature: gene Location: 6210-6344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), Acetyltransf_10 (pfam13673)

Seq: LPSZ01000076.1 Shigella boydii strain 603233 603233_78, whole genome shotgun sequence (3685 bp)
Overview 1 RT 1: 1-3585 bp Neighborhood of RT #1 [1, 3585] Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 Feature: gene Location: 1-594 bp Feature: domain Description: Collar Location: 4-103 bp Feature: domain Description: Collar Location: 4-103 bp Feature: domain Description: Phage_fiber Location: 154-193 bp Feature: domain Description: Phage_fiber Location: 154-193 bp Feature: domain Description: Phage_fiber Location: 250-289 bp Feature: domain Description: Phage_fiber Location: 2 50-2 89 bp Feature: domain Description: Phage_fiber Location: 295-322 bp Feature: domain Description: Phage_fiber Location: 2 95-32 2 bp Feature: domain Description: Phage_fiber Location: 397-436 bp Feature: domain Description: Phage_fiber Location: 397-436 bp Feature: domain Description: Phage_fiber Location: 442-472 bp Feature: domain Description: Phage_fiber Location: 442 -472 bp Feature: gene Location: 594-1178 bp Feature: domain Description: Caudo_TAP Location: 810-1167 bp Feature: domain Description: Caudo_TAP Location: 810-1167 bp Feature: gene Location: 1624-3228 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1915-2506 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1915-2 506 bp Feature: domain Description: TIR_2 Location: 2833-3121 bp Feature: domain Description: TIR_2 Location: 2 833-312 1 bp Feature: gene Location: 3424-3585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Collar (pfam07484), Phage_fiber (pfam03335), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413)