myRT

myRT report for GCA_001906365.1_100706

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Seq: LPSY01000118.1 Shigella boydii strain 100706 100706_119, whole genome shotgun sequence (8149 bp)
Overview 1 RT 1: 397-7532 bp Neighborhood of RT #1 [397, 7597] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 397-4515 bp Feature: domain Description: ESPR Location: 400-469 bp Feature: domain Description: ESPR Location: 400-469 bp Feature: domain Description: Peptidase_S6 Location: 550-2722 bp Feature: domain Description: Peptidase_S6 Location: 550-2722 bp Feature: domain Description: autotrans_barl Location: 3286-4513 bp Feature: domain Description: autotrans_barl Location: 3286-451 3 bp Feature: gene Location: 4680-5066 bp Feature: domain Description: PHA02517 Location: 4683-5064 bp Feature: domain Description: PHA0251 7 Location: 4683-5064 bp Feature: gene Location: 5243-6766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5516-6248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551 6-6248 bp Feature: domain Description: GIIM Note: maturase Location: 6323-6521 bp Feature: domain Description: GIIM Note: maturase Location: 6323-6521 bp Feature: gene Location: 6720-7145 bp Feature: gene Location: 7358-7597 bp Feature: domain Description: PHA02517 Location: 7361-7532 bp Feature: domain Description: PHA0251 7 Location: 7361 -7532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LPSY01000180.1 Shigella boydii strain 100706 100706_181, whole genome shotgun sequence (6466 bp)
Overview 1 RT 1: 3-2897 bp Neighborhood of RT #1 [3, 2911] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-218 bp Feature: domain Description: PHA02517 Location: 6-216 bp Feature: domain Description: PHA02 517 Location: 6-2 16 bp Feature: gene Location: 312-443 bp Feature: domain Description: DDE_Tnp_IS66 Location: 324-417 bp Feature: domain Description: DDE_Tnp_IS66 Location: 32 4-417 bp Feature: gene Location: 1004-2137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1106-1760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1106-1760 bp Feature: domain Description: GIIM Note: maturase Location: 1838-2060 bp Feature: domain Description: GIIM Note: maturase Location: 1838-2 060 bp Feature: gene Location: 2253-2399 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2265-2376 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 2 65-2 376 bp Feature: gene Location: 2426-2911 bp Feature: domain Description: COG3547 Location: 2444-2897 bp Feature: domain Description: COG3547 Location: 2 444-2 897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: LPSY01000230.1 Shigella boydii strain 100706 100706_231, whole genome shotgun sequence (5749 bp)
Overview 1 RT 1: 2516-5217 bp Neighborhood of RT #1 [2516, 5237] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2516-2671 bp Feature: gene Location: 2697-3068 bp Feature: domain Description: GIIM Note: maturase Location: 2775-2994 bp Feature: domain Description: GIIM Note: maturase Location: 2775-2994 bp Feature: gene Location: 3076-3879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3376-3871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 76-3 871 bp Feature: gene Location: 3892-4092 bp Feature: domain Description: Tra5 Location: 3901-4075 bp Feature: domain Description: Tra5 Location: 3 901-4075 bp Feature: gene Location: 4488-5237 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4563-5217 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4563 -5217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)