myRT

myRT report for GCA_001906435.1_ASM190643v1

Download annotations/find similar RTs

Seq: LPSW01000176.1 Shigella boydii strain 102265 102265_177, whole genome shotgun sequence (7715 bp)
Overview 1 RT 1: 4286-6971 bp Neighborhood of RT #1 [4286, 6971] COG3547 RVT-GII GIIM Acetyltransf_10 Feature: gene Location: 4286-4771 bp Feature: domain Description: COG3547 Location: 4304-4757 bp Feature: domain Description: COG3547 Location: 4304-4757 bp Feature: gene Location: 4867-5058 bp Feature: gene Location: 5059-6192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5161-5815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 61 -581 5 bp Feature: domain Description: GIIM Note: maturase Location: 5893-6115 bp Feature: domain Description: GIIM Note: maturase Location: 5893-61 1 5 bp Feature: gene Location: 6271-6756 bp Feature: domain Description: Acetyltransf_10 Location: 6406-6721 bp Feature: domain Description: Acetyltransf_1 0 Location: 6406-6721 bp Feature: gene Location: 6837-6971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), Acetyltransf_10 (pfam13673)

Seq: LPSW01000437.1 Shigella boydii strain 102265 102265_438, whole genome shotgun sequence (41926 bp)
Overview 1 RT 1: 28279-36248 bp Neighborhood of RT #1 [28279, 36250] phage_tail_N Phage_fiber_2 Phage_fiber_2 Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 DinI prfC Feature: gene Location: 28279-31191 bp Feature: domain Description: phage_tail_N Location: 28282-28681 bp Feature: domain Description: phage_tail_N Location: 2 82 82 -2 8681 bp Feature: domain Description: Phage_fiber_2 Location: 29665-29785 bp Feature: domain Description: Phage_fiber_2 Location: 2 9665-2 9785 bp Feature: domain Description: Phage_fiber_2 Location: 29797-29917 bp Feature: domain Description: Phage_fiber_2 Location: 2 9797-2 9917 bp Feature: domain Description: Phage_fiber_2 Location: 29929-30046 bp Feature: domain Description: Phage_fiber_2 Location: 2 992 9-30046 bp Feature: domain Description: Collar Location: 30562-30700 bp Feature: domain Description: Collar Location: 30562 -30700 bp Feature: domain Description: Phage_fiber Location: 30751-30790 bp Feature: domain Description: Phage_fiber Location: 30751-30790 bp Feature: domain Description: Phage_fiber Location: 30847-30886 bp Feature: domain Description: Phage_fiber Location: 30847-30886 bp Feature: domain Description: Phage_fiber Location: 30994-31033 bp Feature: domain Description: Phage_fiber Location: 30994-31033 bp Feature: domain Description: Phage_fiber Location: 31039-31072 bp Feature: domain Description: Phage_fiber Location: 31039-31072 bp Feature: gene Location: 31191-31775 bp Feature: domain Description: Caudo_TAP Location: 31407-31764 bp Feature: domain Description: Caudo_TAP Location: 31407-31764 bp Feature: gene Location: 32221-33825 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32512-33103 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32 512 -33103 bp Feature: domain Description: TIR_2 Location: 33430-33718 bp Feature: domain Description: TIR_2 Location: 33430-33718 bp Feature: gene Location: 34183-34383 bp Feature: domain Description: DinI Location: 34192-34363 bp Feature: domain Description: DinI Location: 34192 -34363 bp Feature: gene Location: 34664-36250 bp Feature: domain Description: prfC Location: 34682-36248 bp Feature: domain Description: prfC Location: 34682 -362 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phage_tail_N (pfam08400), Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), DinI (pfam06183), prfC (TIGR00503)

Seq: LPSW01000463.1 Shigella boydii strain 102265 102265_464, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)