myRT

myRT report for GCA_001906585.1_ASM190658v1

Download annotations/find similar RTs

Seq: JUJA01000102.1 Streptomyces kebangsaanensis strain SUK12 scaffold_102_32092nt, whole genome shotgun sequence (32092 bp)
Overview 1 RT 1: 28727-31858 bp Neighborhood of RT #1 [28727, 31995] RVT-GII GIIM Feature: gene Location: 28727-28855 bp Feature: gene Location: 28985-29233 bp Feature: gene Location: 30616-31995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30934-31564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30934-31 564 bp Feature: domain Description: GIIM Note: maturase Location: 31651-31858 bp Feature: domain Description: GIIM Note: maturase Location: 31 651 -31 858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JUJA01000120.1 Streptomyces kebangsaanensis strain SUK12 scaffold_120_68109nt, whole genome shotgun sequence (68109 bp)
Overview 1 RT 1: 64564-67105 bp Neighborhood of RT #1 [64564, 67146] DedA LbH_gamma_CA_like RVT-GII GIIM HNHc Feature: gene Location: 64564-65223 bp Feature: domain Description: DedA Location: 64573-65164 bp Feature: domain Description: DedA Location: 64573-65164 bp Feature: gene Location: 65270-65620 bp Feature: domain Description: LbH_gamma_CA_like Location: 65291-65594 bp Feature: domain Description: LbH_gamma_CA_like Location: 652 91-65594 bp Feature: gene Location: 65674-67146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65731-66391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65731-66391 bp Feature: domain Description: GIIM Note: maturase Location: 66454-66682 bp Feature: domain Description: GIIM Note: maturase Location: 66454-66682 bp Feature: domain Description: HNHc Note: nucleases Location: 66907-67105 bp Feature: domain Description: HNHc Note: nucleases Location: 66907-67105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DedA (COG0586), LbH_gamma_CA_like (cd04645), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JUJA01000161.1 Streptomyces kebangsaanensis strain SUK12 scaffold_161_47247nt, whole genome shotgun sequence (47247 bp)
Overview 1 RT 1: 78-4554 bp Neighborhood of RT #1 [78, 4574] RVT-GII GIIM HNHc UTRA DegQ Feature: gene Location: 78-1550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135-795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 5-795 bp Feature: domain Description: GIIM Note: maturase Location: 858-1086 bp Feature: domain Description: GIIM Note: maturase Location: 858-1086 bp Feature: domain Description: HNHc Note: nucleases Location: 1311-1509 bp Feature: domain Description: HNHc Note: nucleases Location: 13 11-1509 bp Feature: gene Location: 2497-2826 bp Feature: domain Description: UTRA Location: 2512-2782 bp Feature: domain Description: UTRA Location: 2512-2782 bp Feature: gene Location: 3150-4574 bp Feature: domain Description: DegQ Location: 3543-4554 bp Feature: domain Description: DegQ Location: 3 543 -4554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UTRA (smart00866), DegQ (pfam08181), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JUJA01000025.1 Streptomyces kebangsaanensis strain SUK12 scaffold_25_5656nt, whole genome shotgun sequence (5656 bp)
Overview 1 RT 1: 2810-5422 bp Neighborhood of RT #1 [2810, 5559] HTH_17 Phage_int_SAM_3 RVT-GII GIIM Feature: gene Location: 2810-3121 bp Feature: domain Description: HTH_17 Location: 2879-3035 bp Feature: domain Description: HTH_17 Location: 2879-3035 bp Feature: gene Location: 3380-3616 bp Feature: domain Description: Phage_int_SAM_3 Location: 3458-3572 bp Feature: domain Description: Phage_int_SAM_3 Location: 34 58-3572 bp Feature: gene Location: 4180-5559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4498-5128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 98-5128 bp Feature: domain Description: GIIM Note: maturase Location: 5215-5422 bp Feature: domain Description: GIIM Note: maturase Location: 5215-54 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), Phage_int_SAM_3 (pfam14659), RVT-GII, GIIM (pfam08388)

Seq: JUJA01000029.1 Streptomyces kebangsaanensis strain SUK12 scaffold_29_8986nt, whole genome shotgun sequence (8986 bp)
Overview 1 RT 1: 444-8406 bp Neighborhood of RT #1 [444, 8543] RVT-GII GIIM DDE_5 DEDD_Tnp_IS110 Transposase_20 XerC RVT-GII GIIM Feature: gene Location: 444-1823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 762-1392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 762-1392 bp Feature: domain Description: GIIM Note: maturase Location: 1479-1686 bp Feature: domain Description: GIIM Note: maturase Location: 1479-1686 bp Feature: gene Location: 2238-2858 bp Feature: domain Description: DDE_5 Location: 2295-2769 bp Feature: domain Description: DDE_5 Location: 2295 -2769 bp Feature: gene Location: 2935-3408 bp Feature: gene Location: 4117-5031 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4132-4255 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4132-425 5 bp Feature: domain Description: Transposase_20 Location: 4552-4786 bp Feature: domain Description: Transposase_20 Location: 45 5 2-4786 bp Feature: gene Location: 5319-6713 bp Feature: domain Description: XerC Location: 5724-6618 bp Feature: domain Description: XerC Location: 5 724-6618 bp Feature: gene Location: 7164-8543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7482-8112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7482-8112 bp Feature: domain Description: GIIM Note: maturase Location: 8199-8406 bp Feature: domain Description: GIIM Note: maturase Location: 8199-8406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), XerC (COG4973)

Seq: JUJA01000030.1 Streptomyces kebangsaanensis strain SUK12 scaffold_30_18595nt, whole genome shotgun sequence (18595 bp)
Overview 1 RT 1: 98-2698 bp Neighborhood of RT #1 [98, 2698] RVT-GII GIIM Feature: gene Location: 98-1477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416-1046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 416 -1046 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1340 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1340 bp Feature: gene Location: 2041-2373 bp Feature: gene Location: 2378-2698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JUJA01000069.1 Streptomyces kebangsaanensis strain SUK12 scaffold_69_7033nt, whole genome shotgun sequence (7033 bp)
Overview 1 RT 1: 670-3302 bp Neighborhood of RT #1 [670, 3302] RVT_N RVT-GII GIIM HNHc MngR Feature: gene Location: 670-2436 bp Feature: RT Description: RVT_N Location: 730-976 bp Feature: RT Description: RVT_N Location: 7 30-97 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1021-1681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1021-1681 bp Feature: domain Description: GIIM Note: maturase Location: 1744-1972 bp Feature: domain Description: GIIM Note: maturase Location: 17 44-197 2 bp Feature: domain Description: HNHc Note: nucleases Location: 2197-2395 bp Feature: domain Description: HNHc Note: nucleases Location: 2197 -2395 bp Feature: gene Location: 2501-2944 bp Feature: domain Description: MngR Location: 2510-2939 bp Feature: domain Description: MngR Location: 2510-2939 bp Feature: gene Location: 3024-3302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MngR (COG2188), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JUJA01000072.1 Streptomyces kebangsaanensis strain SUK12 scaffold_72_99747nt, whole genome shotgun sequence (99747 bp)
Overview 1 RT 1: 95612-99513 bp Neighborhood of RT #1 [95612, 99650] COG4585 CitB RVT-GII GIIM Feature: gene Location: 95612-96844 bp Feature: domain Description: COG4585 Location: 95762-96779 bp Feature: domain Description: COG458 5 Location: 95762-96779 bp Feature: gene Location: 96854-97426 bp Feature: domain Description: CitB Location: 96857-97421 bp Feature: domain Description: CitB Location: 968 57-97421 bp Feature: gene Location: 98271-99650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98589-99219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98 58 9-99219 bp Feature: domain Description: GIIM Note: maturase Location: 99306-99513 bp Feature: domain Description: GIIM Note: maturase Location: 99306-99513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4585 (Signal transduction histidine kinase ), CitB (TIGR02484), RVT-GII, GIIM (pfam08388)

Seq: JUJA01000098.1 Streptomyces kebangsaanensis strain SUK12 scaffold_98_21147nt, whole genome shotgun sequence (21147 bp)
Overview 1 RT 1: 17514-21029 bp Neighborhood of RT #1 [17514, 21070] LbH_MAT_like PLN02296 RVT-GII GIIM HNHc Feature: gene Location: 17514-18365 bp Feature: domain Description: LbH_MAT_like Location: 17835-18156 bp Feature: domain Description: LbH_MAT_like Location: 17835-18156 bp Feature: gene Location: 18446-18655 bp Feature: domain Description: PLN02296 Location: 18464-18641 bp Feature: domain Description: PLN0229 6 Location: 18464-18641 bp Feature: gene Location: 19598-21070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19655-20315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19 655-20315 bp Feature: domain Description: GIIM Note: maturase Location: 20378-20606 bp Feature: domain Description: GIIM Note: maturase Location: 20378-20606 bp Feature: domain Description: HNHc Note: nucleases Location: 20831-21029 bp Feature: domain Description: HNHc Note: nucleases Location: 20831-21029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LbH_MAT_like (cd04647), PLN02296 (carbonate dehydratase), RVT-GII, GIIM (pfam08388), HNHc (smart00507)