myRT

myRT report for GCA_001907315.1_ASM190731v1

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Seq: LSGB01000129.1 Escherichia coli strain EC10016 EC10016_c129, whole genome shotgun sequence (3915 bp)
Overview 1 RT 1: 2149-3912 bp Neighborhood of RT #1 [2149, 3914] RVT-GII GIIM HNHc PHA02517 Feature: gene Location: 2149-2343 bp Feature: gene Location: 2401-2622 bp Feature: gene Location: 2655-3416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2664-2724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2664-2724 bp Feature: domain Description: GIIM Note: maturase Location: 2778-3009 bp Feature: domain Description: GIIM Note: maturase Location: 2778-3009 bp Feature: domain Description: HNHc Note: nucleases Location: 3210-3369 bp Feature: domain Description: HNHc Note: nucleases Location: 321 0-3369 bp Feature: gene Location: 3615-3914 bp Feature: domain Description: PHA02517 Location: 3618-3912 bp Feature: domain Description: PHA0251 7 Location: 361 8-391 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LSGB01000148.1 Escherichia coli strain EC10016 EC10016_c148, whole genome shotgun sequence (11403 bp)
Overview 1 RT 1: 2-1872 bp Neighborhood of RT #1 [2, 1934] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 2-526 bp Feature: domain Description: DDE_Tnp_1 Location: 8-281 bp Feature: domain Description: DDE_Tnp_1 Location: 8-2 81 bp Feature: gene Location: 552-755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 660-750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 660-750 bp Feature: gene Location: 816-1172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825-1146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 5-1146 bp Feature: gene Location: 1179-1310 bp Feature: gene Location: 1353-1934 bp Feature: domain Description: HTH_23 Location: 1461-1548 bp Feature: domain Description: HTH_2 3 Location: 1461-1548 bp Feature: domain Description: InsE Location: 1677-1872 bp Feature: domain Description: InsE Location: 1677-1872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: LSGB01000232.1 Escherichia coli strain EC10016 EC10016_c232, whole genome shotgun sequence (6137 bp)
Overview 1 RT 1: 92-2678 bp Neighborhood of RT #1 [92, 2692] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 92-223 bp Feature: domain Description: DDE_Tnp_IS66 Location: 104-197 bp Feature: domain Description: DDE_Tnp_IS66 Location: 104-197 bp Feature: gene Location: 701-1918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 887-1541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 887-1541 bp Feature: domain Description: GIIM Note: maturase Location: 1619-1841 bp Feature: domain Description: GIIM Note: maturase Location: 1619-1841 bp Feature: gene Location: 2034-2180 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2046-2157 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2046-2157 bp Feature: gene Location: 2207-2692 bp Feature: domain Description: COG3547 Location: 2225-2678 bp Feature: domain Description: COG3 547 Location: 2225-2678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: LSGB01000423.1 Escherichia coli strain EC10016 EC10016_c423, whole genome shotgun sequence (804 bp)
Overview 1 RT 1: 119-797 bp Neighborhood of RT #1 [119, 802] RVT-GII RVT-GII Feature: gene Location: 119-475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128-449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128-4 4 9 bp Feature: gene Location: 536-802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LSGB01000076.1 Escherichia coli strain EC10016 EC10016_c76, whole genome shotgun sequence (3212 bp)
Overview 1 RT 1: 3-3092 bp Neighborhood of RT #1 [3, 3094] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3-416 bp Feature: domain Description: PHA02517 Location: 9-351 bp Feature: domain Description: PHA025 17 Location: 9-35 1 bp Feature: gene Location: 1008-2531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1281-2013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1281-2013 bp Feature: domain Description: GIIM Note: maturase Location: 2088-2286 bp Feature: domain Description: GIIM Note: maturase Location: 2088-2286 bp Feature: gene Location: 2708-3094 bp Feature: domain Description: PHA02517 Location: 2711-3092 bp Feature: domain Description: PHA025 17 Location: 2711-3092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LSGB01000087.1 Escherichia coli strain EC10016 EC10016_c87, whole genome shotgun sequence (5020 bp)
Overview 1 RT 1: 2399-4777 bp Neighborhood of RT #1 [2399, 4947] RVT-GII GIIM RVT-GII Feature: gene Location: 2399-2641 bp Feature: gene Location: 2813-2968 bp Feature: gene Location: 2994-3521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3000-3144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3000-3144 bp Feature: domain Description: GIIM Note: maturase Location: 3228-3444 bp Feature: domain Description: GIIM Note: maturase Location: 3228-3444 bp Feature: gene Location: 3531-3803 bp Feature: gene Location: 3820-4947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4120-4777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4120-4777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)