myRT

myRT report for GCA_001907325.1_ASM190732v1

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Seq: LSGC01000130.1 Escherichia coli strain ATM457 ATM457_c130, whole genome shotgun sequence (5812 bp)
Overview 1 RT 1: 3897-5611 bp Neighborhood of RT #1 [3897, 5709] RVT_N RVT-GII Feature: gene Location: 3897-4163 bp Feature: gene Location: 4399-4533 bp Feature: gene Location: 4690-5709 bp Feature: domain Description: RVT_N Location: 4738-4981 bp Feature: domain Description: RVT_N Location: 4738-4981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5026-5611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5026-561 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: LSGC01000135.1 Escherichia coli strain ATM457 ATM457_c135, whole genome shotgun sequence (7373 bp)
Overview 1 RT 1: 4058-6712 bp Neighborhood of RT #1 [4058, 6712] COG3547 RVT-GII GIIM Feature: gene Location: 4058-4543 bp Feature: domain Description: COG3547 Location: 4076-4529 bp Feature: domain Description: COG3547 Location: 4076-452 9 bp Feature: gene Location: 4639-4806 bp Feature: gene Location: 4832-6049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5018-5672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5018-5672 bp Feature: domain Description: GIIM Note: maturase Location: 5750-5972 bp Feature: domain Description: GIIM Note: maturase Location: 5750-5972 bp Feature: gene Location: 6060-6479 bp Feature: gene Location: 6518-6712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LSGC01000165.1 Escherichia coli strain ATM457 ATM457_c165, whole genome shotgun sequence (2395 bp)
Overview 1 RT 1: 103-2144 bp Neighborhood of RT #1 [103, 2293] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 103-885 bp Feature: domain Description: DDE_Tnp_1 Location: 109-817 bp Feature: domain Description: DDE_Tnp_1 Location: 109-817 bp Feature: gene Location: 911-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1019-1109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1019-1109 bp Feature: gene Location: 1175-1531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184-1505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184-1505 bp Feature: gene Location: 1625-2293 bp Feature: domain Description: HTH_23 Location: 1733-1820 bp Feature: domain Description: HTH_23 Location: 173 3 -1820 bp Feature: domain Description: InsE Location: 1949-2144 bp Feature: domain Description: InsE Location: 1949-2144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: LSGC01000037.1 Escherichia coli strain ATM457 ATM457_c37, whole genome shotgun sequence (2383 bp)
Overview 1 RT 1: 1-2054 bp Neighborhood of RT #1 [1, 2071] InsG RVT-GII Tra5 Feature: gene Location: 1-390 bp Feature: domain Description: InsG Location: 4-388 bp Feature: domain Description: InsG Location: 4 -388 bp Feature: gene Location: 710-1837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1010-1667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1010-1667 bp Feature: gene Location: 1850-2071 bp Feature: domain Description: Tra5 Location: 1862-2054 bp Feature: domain Description: Tra5 Location: 1862-2054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsG (COG3385), RVT-GII, Tra5 (COG2801)

Seq: LSGC01000053.1 Escherichia coli strain ATM457 ATM457_c53, whole genome shotgun sequence (19049 bp)
Overview 1 RT 1: 84-7844 bp Neighborhood of RT #1 [84, 7846] InsE PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 84-410 bp Feature: domain Description: InsE Location: 87-408 bp Feature: domain Description: InsE Location: 87-408 bp Feature: gene Location: 646-885 bp Feature: domain Description: PHA02517 Location: 649-820 bp Feature: domain Description: PHA025 17 Location: 649-820 bp Feature: gene Location: 1477-3000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1750-2482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175 0-2482 bp Feature: domain Description: GIIM Note: maturase Location: 2557-2755 bp Feature: domain Description: GIIM Note: maturase Location: 25 5 7-275 5 bp Feature: gene Location: 3177-3563 bp Feature: domain Description: PHA02517 Location: 3180-3561 bp Feature: domain Description: PHA025 17 Location: 3180-35 61 bp Feature: gene Location: 3728-7846 bp Feature: domain Description: ESPR Location: 3731-3800 bp Feature: domain Description: ESPR Location: 3731-3800 bp Feature: domain Description: Peptidase_S6 Location: 3881-6053 bp Feature: domain Description: Peptidase_S6 Location: 3881-605 3 bp Feature: domain Description: autotrans_barl Location: 6617-7844 bp Feature: domain Description: autotrans_barl Location: 6617-7844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: LSGC01000094.1 Escherichia coli strain ATM457 ATM457_c94, whole genome shotgun sequence (3601 bp)
Overview 1 RT 1: 104-2755 bp Neighborhood of RT #1 [104, 2757] RVT-GII GIIM ushA Feature: gene Location: 104-631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110-254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110-254 bp Feature: domain Description: GIIM Note: maturase Location: 338-554 bp Feature: domain Description: GIIM Note: maturase Location: 338-554 bp Feature: gene Location: 984-1226 bp Feature: gene Location: 1138-2757 bp Feature: domain Description: ushA Location: 1153-2755 bp Feature: domain Description: ushA Location: 1153-2755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ushA (PRK09558)