myRT

myRT report for GCA_001907335.1_ASM190733v1

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Seq: LSGF01000283.1 Escherichia coli strain ATM465 ATM465_c283, whole genome shotgun sequence (5979 bp)
Overview 1 RT 1: 3-2520 bp Neighborhood of RT #1 [3, 2534] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-233 bp Feature: gene Location: 543-1760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729-1 383 bp Feature: domain Description: GIIM Note: maturase Location: 1461-1683 bp Feature: domain Description: GIIM Note: maturase Location: 1 461 -1 683 bp Feature: gene Location: 1876-2022 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1888-1999 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 888-1 999 bp Feature: gene Location: 2049-2534 bp Feature: domain Description: COG3547 Location: 2067-2520 bp Feature: domain Description: COG3547 Location: 2067-2520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: LSGF01000325.1 Escherichia coli strain ATM465 ATM465_c325, whole genome shotgun sequence (3560 bp)
Overview 1 RT 1: 59-3341 bp Neighborhood of RT #1 [59, 3424] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE HTH_23 HTH_33 DDE_3 Feature: gene Location: 59-841 bp Feature: domain Description: DDE_Tnp_1 Location: 65-773 bp Feature: domain Description: DDE_Tnp_1 Location: 65-773 bp Feature: gene Location: 867-1070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975-1065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975-1065 bp Feature: gene Location: 1131-1487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1140-1461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1140-1461 bp Feature: gene Location: 1581-2249 bp Feature: domain Description: HTH_23 Location: 1689-1776 bp Feature: domain Description: HTH_2 3 Location: 1689-1776 bp Feature: domain Description: InsE Location: 1905-2100 bp Feature: domain Description: InsE Location: 1905-2 100 bp Feature: gene Location: 2393-3424 bp Feature: domain Description: HTH_23 Location: 2471-2612 bp Feature: domain Description: HTH_2 3 Location: 2 471-2 612 bp Feature: domain Description: HTH_33 Location: 2717-2864 bp Feature: domain Description: HTH_33 Location: 2 717-2 864 bp Feature: domain Description: DDE_3 Location: 2921-3341 bp Feature: domain Description: DDE_3 Location: 2 92 1-3341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: LSGF01000352.1 Escherichia coli strain ATM465 ATM465_c352, whole genome shotgun sequence (5158 bp)
Overview 1 RT 1: 1-4279 bp Neighborhood of RT #1 [1, 4281] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 1-189 bp Feature: domain Description: Tra5 Location: 10-172 bp Feature: domain Description: Tra5 Location: 10-172 bp Feature: gene Location: 202-1329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502-1159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502-1159 bp Feature: gene Location: 1628-2155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1634-1778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163 4-1778 bp Feature: domain Description: GIIM Note: maturase Location: 1862-2078 bp Feature: domain Description: GIIM Note: maturase Location: 1862-2078 bp Feature: gene Location: 2508-2750 bp Feature: gene Location: 2662-4281 bp Feature: domain Description: ushA Location: 2677-4279 bp Feature: domain Description: ushA Location: 2677-4279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)