myRT

myRT report for GCA_001907375.1_ASM190737v1

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Seq: LSGH01000200.1 Escherichia coli strain ATM459 ATM459_c200, whole genome shotgun sequence (6772 bp)
Overview 1 RT 1: 4058-6771 bp Neighborhood of RT #1 [4058, 6771] COG3547 RVT-GII GIIM Feature: gene Location: 4058-4543 bp Feature: domain Description: COG3547 Location: 4076-4529 bp Feature: domain Description: COG3547 Location: 4076-4529 bp Feature: gene Location: 4639-4806 bp Feature: gene Location: 4832-6049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5018-5672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 8-5672 bp Feature: domain Description: GIIM Note: maturase Location: 5750-5972 bp Feature: domain Description: GIIM Note: maturase Location: 5750-5972 bp Feature: gene Location: 6060-6479 bp Feature: gene Location: 6529-6771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LSGH01000331.1 Escherichia coli strain ATM459 ATM459_c331, whole genome shotgun sequence (2669 bp)
Overview 1 RT 1: 111-2664 bp Neighborhood of RT #1 [111, 2666] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE HTH_23 Feature: gene Location: 111-893 bp Feature: domain Description: DDE_Tnp_1 Location: 117-825 bp Feature: domain Description: DDE_Tnp_1 Location: 117-82 5 bp Feature: gene Location: 919-1122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1027-1117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 7-1117 bp Feature: gene Location: 1183-1539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1192-1513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1192 -1513 bp Feature: gene Location: 1633-2301 bp Feature: domain Description: HTH_23 Location: 1741-1828 bp Feature: domain Description: HTH_2 3 Location: 1741-182 8 bp Feature: domain Description: InsE Location: 1957-2152 bp Feature: domain Description: InsE Location: 1957-2 152 bp Feature: gene Location: 2445-2666 bp Feature: domain Description: HTH_23 Location: 2523-2664 bp Feature: domain Description: HTH_2 3 Location: 2 52 3-2 664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: LSGH01000088.1 Escherichia coli strain ATM459 ATM459_c88, whole genome shotgun sequence (5664 bp)
Overview 1 RT 1: 2226-5659 bp Neighborhood of RT #1 [2226, 5661] RVT-GII GIIM RVT-GII Tra5 PRK09409 Feature: gene Location: 2226-2468 bp Feature: gene Location: 2640-2795 bp Feature: gene Location: 2821-3348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2827-2971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2827-2971 bp Feature: domain Description: GIIM Note: maturase Location: 3055-3271 bp Feature: domain Description: GIIM Note: maturase Location: 3 055-3 271 bp Feature: gene Location: 3358-3630 bp Feature: gene Location: 3647-4774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3947-4604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 947-4604 bp Feature: gene Location: 4787-5008 bp Feature: domain Description: Tra5 Location: 4799-4991 bp Feature: domain Description: Tra5 Location: 4799-4991 bp Feature: gene Location: 5272-5661 bp Feature: domain Description: PRK09409 Location: 5275-5659 bp Feature: domain Description: PRK09409 Location: 5275-5659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801), PRK09409 (IS2 transposase TnpB; Reviewed)