myRT

myRT report for GCA_001907385.1_ASM190738v1

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Seq: LSGI01000110.1 Escherichia coli strain EC10010 EC10010_c110, whole genome shotgun sequence (11238 bp)
Overview 1 RT 1: 5143-10987 bp Neighborhood of RT #1 [5143, 11136] RVT_N RVT-GII GIIM HNHc Antirestrict DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 5143-5409 bp Feature: gene Location: 5645-5779 bp Feature: gene Location: 5936-7609 bp Feature: domain Description: RVT_N Location: 5984-6227 bp Feature: domain Description: RVT_N Location: 5984-6227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6272-6917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6272-691 7 bp Feature: domain Description: GIIM Note: maturase Location: 6971-7202 bp Feature: domain Description: GIIM Note: maturase Location: 6971 -7202 bp Feature: domain Description: HNHc Note: nucleases Location: 7403-7562 bp Feature: domain Description: HNHc Note: nucleases Location: 7403-7562 bp Feature: gene Location: 7642-7863 bp Feature: gene Location: 7921-8115 bp Feature: gene Location: 8631-9056 bp Feature: domain Description: Antirestrict Location: 8766-9054 bp Feature: domain Description: Antirestrict Location: 8766-9054 bp Feature: gene Location: 9075-9728 bp Feature: domain Description: DDE_Tnp_1 Location: 9081-9696 bp Feature: domain Description: DDE_Tnp_1 Location: 9081 -9696 bp Feature: gene Location: 9754-9957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9862-9952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9862-9952 bp Feature: gene Location: 10018-10374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10027-10348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0027-1 0348 bp Feature: gene Location: 10468-11136 bp Feature: domain Description: HTH_23 Location: 10576-10663 bp Feature: domain Description: HTH_23 Location: 1 0576-1 0663 bp Feature: domain Description: InsE Location: 10792-10987 bp Feature: domain Description: InsE Location: 1 0792-1 0987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Antirestrict (pfam03230), DDE_Tnp_1 (pfam01609), HTH_23 (pfam13384), InsE (COG2963)

Seq: LSGI01000117.1 Escherichia coli strain EC10010 EC10010_c117, whole genome shotgun sequence (19891 bp)
Overview 1 RT 1: 15747-18096 bp Neighborhood of RT #1 [15747, 19835] PRK09692 RVT-UG5 Feature: gene Location: 15747-17003 bp Feature: domain Description: PRK09692 Location: 15756-16959 bp Feature: domain Description: PRK09692 Location: 15756-16959 bp Feature: gene Location: 17095-17643 bp Feature: gene Location: 17784-19835 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 17799-18096 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 17799-18096 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG5

Seq: LSGI01000033.1 Escherichia coli strain EC10010 EC10010_c33, whole genome shotgun sequence (68064 bp)
Overview 1 RT 1: 28155-32035 bp Neighborhood of RT #1 [28155, 32040] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 28155-28613 bp Feature: domain Description: dut Location: 28161-28608 bp Feature: domain Description: dut Location: 28161-28608 bp Feature: gene Location: 28720-29316 bp Feature: domain Description: slmA Location: 28726-29302 bp Feature: domain Description: slmA Location: 28726-293 02 bp Feature: gene Location: 29362-30321 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29497-30046 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29497-3 0046 bp Feature: gene Location: 30617-31273 bp Feature: domain Description: pyrE Location: 30635-31268 bp Feature: domain Description: pyrE Location: 3 063 5-3 1268 bp Feature: gene Location: 31324-32040 bp Feature: domain Description: rph Location: 31327-32035 bp Feature: domain Description: rph Location: 3 13 27-3 203 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: LSGI01000060.1 Escherichia coli strain EC10010 EC10010_c60, whole genome shotgun sequence (7135 bp)
Overview 1 RT 1: 4424-7134 bp Neighborhood of RT #1 [4424, 7134] COG3547 RVT-GII GIIM Feature: gene Location: 4424-4909 bp Feature: domain Description: COG3547 Location: 4442-4895 bp Feature: domain Description: COG354 7 Location: 4 4 4 2-4 895 bp Feature: gene Location: 5005-5172 bp Feature: gene Location: 5198-6415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5384-6038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5384 -6038 bp Feature: domain Description: GIIM Note: maturase Location: 6116-6338 bp Feature: domain Description: GIIM Note: maturase Location: 6116-6338 bp Feature: gene Location: 6426-6845 bp Feature: gene Location: 6895-7134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LSGI01000066.1 Escherichia coli strain EC10010 EC10010_c66, whole genome shotgun sequence (5348 bp)
Overview 1 RT 1: 2065-5345 bp Neighborhood of RT #1 [2065, 5347] RVT-GII GIIM RVT-GII Tra5 PRK09409 Feature: gene Location: 2065-2307 bp Feature: gene Location: 2479-2634 bp Feature: gene Location: 2660-3187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2666-2810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2666-2810 bp Feature: domain Description: GIIM Note: maturase Location: 2894-3110 bp Feature: domain Description: GIIM Note: maturase Location: 2894-3110 bp Feature: gene Location: 3197-3469 bp Feature: gene Location: 3486-4613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3786-4443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3786-4443 bp Feature: gene Location: 4626-4847 bp Feature: domain Description: Tra5 Location: 4638-4830 bp Feature: domain Description: Tra5 Location: 4638-4830 bp Feature: gene Location: 5111-5347 bp Feature: domain Description: PRK09409 Location: 5114-5345 bp Feature: domain Description: PRK09409 Location: 5 114-5 345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801), PRK09409 (IS2 transposase TnpB; Reviewed)