myRT

myRT report for GCA_001907395.1_ASM190739v1

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Seq: LSGJ01000207.1 Escherichia coli strain EC10032 EC10032_c207, whole genome shotgun sequence (19851 bp)
Overview 1 RT 1: 36-4080 bp Neighborhood of RT #1 [36, 4124] RVT-UG5 PRK09692 Feature: gene Location: 36-1940 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 42-201 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 42-201 bp Feature: gene Location: 2228-2776 bp Feature: gene Location: 2868-4124 bp Feature: domain Description: PRK09692 Location: 2877-4080 bp Feature: domain Description: PRK09692 Location: 2877-4080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, PRK09692 (Integrase; provisional)

Seq: LSGJ01000239.1 Escherichia coli strain EC10032 EC10032_c239, whole genome shotgun sequence (4667 bp)
Overview 1 RT 1: 74-4151 bp Neighborhood of RT #1 [74, 4153] RVT-GII RVT-GII GIIM ushA Feature: gene Location: 74-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1031 bp Feature: gene Location: 1500-2027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1506-1650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1506-1650 bp Feature: domain Description: GIIM Note: maturase Location: 1734-1950 bp Feature: domain Description: GIIM Note: maturase Location: 1734-1950 bp Feature: gene Location: 2380-2622 bp Feature: gene Location: 2534-4153 bp Feature: domain Description: ushA Location: 2549-4151 bp Feature: domain Description: ushA Location: 2 549-4151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: LSGJ01000028.1 Escherichia coli strain EC10032 EC10032_c28, whole genome shotgun sequence (49915 bp)
Overview 1 RT 1: 9992-13872 bp Neighborhood of RT #1 [9992, 13877] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9992-10450 bp Feature: domain Description: dut Location: 9998-10445 bp Feature: domain Description: dut Location: 9998-10445 bp Feature: gene Location: 10557-11153 bp Feature: domain Description: slmA Location: 10563-11139 bp Feature: domain Description: slmA Location: 10563 -1113 9 bp Feature: gene Location: 11199-12158 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11334-11883 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113 3 4-11883 bp Feature: gene Location: 12454-13110 bp Feature: domain Description: pyrE Location: 12472-13105 bp Feature: domain Description: pyrE Location: 12472-13 105 bp Feature: gene Location: 13161-13877 bp Feature: domain Description: rph Location: 13164-13872 bp Feature: domain Description: rph Location: 13 164-13 872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: LSGJ01000066.1 Escherichia coli strain EC10032 EC10032_c66, whole genome shotgun sequence (11578 bp)
Overview 1 RT 1: 257-6006 bp Neighborhood of RT #1 [257, 6006] HTH_23 InsE RVT-GII DDE_Tnp_1 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 257-925 bp Feature: domain Description: HTH_23 Location: 365-452 bp Feature: domain Description: HTH_23 Location: 365-4 52 bp Feature: domain Description: InsE Location: 581-776 bp Feature: domain Description: InsE Location: 581-776 bp Feature: gene Location: 1019-1279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1022-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1022-1253 bp Feature: gene Location: 1289-1717 bp Feature: gene Location: 1731-2318 bp Feature: domain Description: DDE_Tnp_1 Location: 1737-2286 bp Feature: domain Description: DDE_Tnp_1 Location: 1737-2286 bp Feature: gene Location: 3278-3472 bp Feature: gene Location: 3530-3751 bp Feature: gene Location: 3784-5457 bp Feature: domain Description: RVT_N Location: 3832-4075 bp Feature: domain Description: RVT_N Location: 3832-4 075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4120-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 120-4 765 bp Feature: domain Description: GIIM Note: maturase Location: 4819-5050 bp Feature: domain Description: GIIM Note: maturase Location: 4 819-5050 bp Feature: domain Description: HNHc Note: nucleases Location: 5251-5410 bp Feature: domain Description: HNHc Note: nucleases Location: 5251-54 10 bp Feature: gene Location: 5614-5748 bp Feature: gene Location: 5812-6006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507)

Seq: LSGJ01000067.1 Escherichia coli strain EC10032 EC10032_c67, whole genome shotgun sequence (6713 bp)
Overview 1 RT 1: 3879-6533 bp Neighborhood of RT #1 [3879, 6533] COG3547 RVT-GII GIIM Feature: gene Location: 3879-4364 bp Feature: domain Description: COG3547 Location: 3897-4350 bp Feature: domain Description: COG35 47 Location: 3897-435 0 bp Feature: gene Location: 4460-4627 bp Feature: gene Location: 4653-5870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4839-5493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4839-5 493 bp Feature: domain Description: GIIM Note: maturase Location: 5571-5793 bp Feature: domain Description: GIIM Note: maturase Location: 5 5 71-5 793 bp Feature: gene Location: 5881-6300 bp Feature: gene Location: 6339-6533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)