myRT

myRT report for GCA_001907435.1_ASM190743v1

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Seq: LSFZ01000199.1 Escherichia coli strain ATM456 ATM456_c199, whole genome shotgun sequence (6433 bp)
Overview 1 RT 1: 3-2955 bp Neighborhood of RT #1 [3, 2969] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-275 bp Feature: domain Description: PHA02517 Location: 6-273 bp Feature: domain Description: PHA0251 7 Location: 6-273 bp Feature: gene Location: 369-500 bp Feature: domain Description: DDE_Tnp_IS66 Location: 381-474 bp Feature: domain Description: DDE_Tnp_IS66 Location: 381 -474 bp Feature: gene Location: 1062-2195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1164-1818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 64-1 81 8 bp Feature: domain Description: GIIM Note: maturase Location: 1896-2118 bp Feature: domain Description: GIIM Note: maturase Location: 1 896-21 1 8 bp Feature: gene Location: 2311-2457 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2323-2434 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2323-2434 bp Feature: gene Location: 2484-2969 bp Feature: domain Description: COG3547 Location: 2502-2955 bp Feature: domain Description: COG3547 Location: 2502-2955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050)

Seq: LSFZ01000201.1 Escherichia coli strain ATM456 ATM456_c201, whole genome shotgun sequence (5562 bp)
Overview 1 RT 1: 2296-5558 bp Neighborhood of RT #1 [2296, 5560] RVT-GII GIIM RVT-GII Tra5 PRK09409 Feature: gene Location: 2296-2538 bp Feature: gene Location: 2710-2865 bp Feature: gene Location: 2891-3418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2897-3041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 897-3041 bp Feature: domain Description: GIIM Note: maturase Location: 3125-3341 bp Feature: domain Description: GIIM Note: maturase Location: 312 5-3341 bp Feature: gene Location: 3428-3700 bp Feature: gene Location: 3717-4844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4017-4674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4017-4674 bp Feature: gene Location: 4857-5078 bp Feature: domain Description: Tra5 Location: 4869-5061 bp Feature: domain Description: Tra5 Location: 4869-5061 bp Feature: gene Location: 5342-5560 bp Feature: domain Description: PRK09409 Location: 5345-5558 bp Feature: domain Description: PRK09409 Location: 5345-5558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801), PRK09409 (IS2 transposase TnpB; Reviewed)

Seq: LSFZ01000233.1 Escherichia coli strain ATM456 ATM456_c233, whole genome shotgun sequence (4147 bp)
Overview 1 RT 1: 3-1741 bp Neighborhood of RT #1 [3, 1741] PHA02517 RVT-GII GIIM HNHc Feature: gene Location: 3-275 bp Feature: domain Description: PHA02517 Location: 6-273 bp Feature: domain Description: PHA02517 Location: 6-273 bp Feature: gene Location: 474-1235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483-543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483 -543 bp Feature: domain Description: GIIM Note: maturase Location: 597-828 bp Feature: domain Description: GIIM Note: maturase Location: 597-828 bp Feature: domain Description: HNHc Note: nucleases Location: 1029-1188 bp Feature: domain Description: HNHc Note: nucleases Location: 1029-1188 bp Feature: gene Location: 1268-1489 bp Feature: gene Location: 1547-1741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LSFZ01000088.1 Escherichia coli strain ATM456 ATM456_c88, whole genome shotgun sequence (12258 bp)
Overview 1 RT 1: 8105-11402 bp Neighborhood of RT #1 [8105, 11470] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII DDE_Tnp_1 Feature: gene Location: 8105-9136 bp Feature: domain Description: HTH_23 Location: 8183-8324 bp Feature: domain Description: HTH_23 Location: 8183-8324 bp Feature: domain Description: HTH_33 Location: 8429-8576 bp Feature: domain Description: HTH_33 Location: 84 29-8576 bp Feature: domain Description: DDE_3 Location: 8633-9053 bp Feature: domain Description: DDE_3 Location: 8633-9053 bp Feature: gene Location: 9280-9948 bp Feature: domain Description: HTH_23 Location: 9388-9475 bp Feature: domain Description: HTH_23 Location: 9388-94 75 bp Feature: domain Description: InsE Location: 9604-9799 bp Feature: domain Description: InsE Location: 9604 -9799 bp Feature: gene Location: 10042-10302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10045-10276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1004 5-10276 bp Feature: gene Location: 10312-10740 bp Feature: gene Location: 10754-11470 bp Feature: domain Description: DDE_Tnp_1 Location: 10760-11402 bp Feature: domain Description: DDE_Tnp_1 Location: 10760-114 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1 (pfam01609), HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), InsE (COG2963)