myRT

myRT report for GCA_001907495.1_ASM190749v1

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Seq: LSGE01000167.1 Escherichia coli strain ATM463 ATM463_c167, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 3446-5867 bp Neighborhood of RT #1 [3446, 5867] COG3547 RVT-GII GIIM Feature: gene Location: 3446-3931 bp Feature: domain Description: COG3547 Location: 3464-3917 bp Feature: domain Description: COG3547 Location: 3464-391 7 bp Feature: gene Location: 4027-4194 bp Feature: gene Location: 4220-5437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4406-5060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4406-5060 bp Feature: domain Description: GIIM Note: maturase Location: 5138-5360 bp Feature: domain Description: GIIM Note: maturase Location: 51 38-5360 bp Feature: gene Location: 5448-5867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LSGE01000347.1 Escherichia coli strain ATM463 ATM463_c347, whole genome shotgun sequence (3721 bp)
Overview 1 RT 1: 220-3502 bp Neighborhood of RT #1 [220, 3585] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE HTH_23 HTH_33 DDE_3 Feature: gene Location: 220-1002 bp Feature: domain Description: DDE_Tnp_1 Location: 226-934 bp Feature: domain Description: DDE_Tnp_1 Location: 2 2 6-934 bp Feature: gene Location: 1028-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1136-1226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1136-12 2 6 bp Feature: gene Location: 1292-1648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1301-1622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1301-162 2 bp Feature: gene Location: 1742-2410 bp Feature: domain Description: HTH_23 Location: 1850-1937 bp Feature: domain Description: HTH_2 3 Location: 1850-1937 bp Feature: domain Description: InsE Location: 2066-2261 bp Feature: domain Description: InsE Location: 2 066-2 2 61 bp Feature: gene Location: 2554-3585 bp Feature: domain Description: HTH_23 Location: 2632-2773 bp Feature: domain Description: HTH_2 3 Location: 2 632 -2 773 bp Feature: domain Description: HTH_33 Location: 2878-3025 bp Feature: domain Description: HTH_33 Location: 2 878-302 5 bp Feature: domain Description: DDE_3 Location: 3082-3502 bp Feature: domain Description: DDE_3 Location: 3082 -3502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: LSGE01000497.1 Escherichia coli strain ATM463 ATM463_c497, whole genome shotgun sequence (803 bp)
Overview 1 RT 1: 73-799 bp Neighborhood of RT #1 [73, 801] RVT-GII Feature: gene Location: 73-801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 73 -799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LSGE01000498.1 Escherichia coli strain ATM463 ATM463_c498, whole genome shotgun sequence (1324 bp)
Overview 1 RT 1: 72-1323 bp Neighborhood of RT #1 [72, 1323] RVT-GII GIIM Feature: gene Location: 72-599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78-222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78-222 bp Feature: domain Description: GIIM Note: maturase Location: 306-522 bp Feature: domain Description: GIIM Note: maturase Location: 306-522 bp Feature: gene Location: 609-881 bp Feature: gene Location: 1156-1323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)