myRT

myRT report for GCA_001907505.1_ASM190750v1

Download annotations/find similar RTs

Seq: LSGG01000010.1 Escherichia coli strain ATM266 ATM266_c10, whole genome shotgun sequence (6431 bp)
Overview 1 RT 1: 3720-6430 bp Neighborhood of RT #1 [3720, 6430] COG3547 RVT-GII GIIM Feature: gene Location: 3720-4205 bp Feature: domain Description: COG3547 Location: 3738-4191 bp Feature: domain Description: COG3547 Location: 3738-41 91 bp Feature: gene Location: 4301-4468 bp Feature: gene Location: 4494-5711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4680-5334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4680-5334 bp Feature: domain Description: GIIM Note: maturase Location: 5412-5634 bp Feature: domain Description: GIIM Note: maturase Location: 541 2-5634 bp Feature: gene Location: 5722-6141 bp Feature: gene Location: 6191-6430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LSGG01000132.1 Escherichia coli strain ATM266 ATM266_c132, whole genome shotgun sequence (11838 bp)
Overview 1 RT 1: 2-3523 bp Neighborhood of RT #1 [2, 3606] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE HTH_23 HTH_33 DDE_3 Feature: gene Location: 2-130 bp Feature: gene Location: 241-1023 bp Feature: domain Description: DDE_Tnp_1 Location: 247-955 bp Feature: domain Description: DDE_Tnp_1 Location: 2 47-955 bp Feature: gene Location: 1049-1252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1157-1247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1157-12 47 bp Feature: gene Location: 1313-1669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1322-1643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 2 -1643 bp Feature: gene Location: 1763-2431 bp Feature: domain Description: HTH_23 Location: 1871-1958 bp Feature: domain Description: HTH_2 3 Location: 1871-1958 bp Feature: domain Description: InsE Location: 2087-2282 bp Feature: domain Description: InsE Location: 2 087-2 2 82 bp Feature: gene Location: 2575-3606 bp Feature: domain Description: HTH_23 Location: 2653-2794 bp Feature: domain Description: HTH_2 3 Location: 2 653-2 794 bp Feature: domain Description: HTH_33 Location: 2899-3046 bp Feature: domain Description: HTH_33 Location: 2 899-3046 bp Feature: domain Description: DDE_3 Location: 3103-3523 bp Feature: domain Description: DDE_3 Location: 3103-352 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963), HTH_33 (pfam13592), DDE_3 (pfam13358)

Seq: LSGG01000015.1 Escherichia coli strain ATM266 ATM266_c15, whole genome shotgun sequence (4725 bp)
Overview 1 RT 1: 350-3069 bp Neighborhood of RT #1 [350, 3069] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 350-616 bp Feature: gene Location: 852-986 bp Feature: gene Location: 1143-2093 bp Feature: domain Description: RVT_N Location: 1191-1434 bp Feature: domain Description: RVT_N Location: 1191-143 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1479-2085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1479-2085 bp Feature: gene Location: 2177-2815 bp Feature: domain Description: GIIM Note: maturase Location: 2183-2408 bp Feature: domain Description: GIIM Note: maturase Location: 2183 -2408 bp Feature: domain Description: HNHc Note: nucleases Location: 2609-2768 bp Feature: domain Description: HNHc Note: nucleases Location: 2609-2768 bp Feature: gene Location: 2848-3069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LSGG01000213.1 Escherichia coli strain ATM266 ATM266_c213, whole genome shotgun sequence (1170 bp)
Overview 1 RT 1: 2-1029 bp Neighborhood of RT #1 [2, 1169] RVT-GII RVT-GII Feature: gene Location: 2-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-4 10 bp Feature: gene Location: 879-1169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885-1029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885-1029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LSGG01000383.1 Escherichia coli strain ATM266 ATM266_c383, whole genome shotgun sequence (1147 bp)
Overview 1 RT 1: 3-1146 bp Neighborhood of RT #1 [3, 1145] Tra5 RVT-GII Feature: gene Location: 3-242 bp Feature: domain Description: Tra5 Location: 30-225 bp Feature: domain Description: Tra5 Location: 30-225 bp Feature: gene Location: 255-1145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555-1146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 5 -1146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII