myRT

myRT report for GCA_001907535.1_ASM190753v1

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Seq: LSGL01000129.1 Escherichia coli strain ATM460 ATM460_c129, whole genome shotgun sequence (6770 bp)
Overview 1 RT 1: 113-2699 bp Neighborhood of RT #1 [113, 2713] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 113-244 bp Feature: domain Description: DDE_Tnp_IS66 Location: 125-218 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 25-21 8 bp Feature: gene Location: 806-1939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 908-1562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 908-1 562 bp Feature: domain Description: GIIM Note: maturase Location: 1640-1862 bp Feature: domain Description: GIIM Note: maturase Location: 1 640-1 862 bp Feature: gene Location: 2055-2201 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2067-2178 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2067-21 78 bp Feature: gene Location: 2228-2713 bp Feature: domain Description: COG3547 Location: 2246-2699 bp Feature: domain Description: COG3547 Location: 2246-2699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: LSGL01000020.1 Escherichia coli strain ATM460 ATM460_c20, whole genome shotgun sequence (80340 bp)
Overview 1 RT 1: 40355-44235 bp Neighborhood of RT #1 [40355, 44240] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 40355-40813 bp Feature: domain Description: dut Location: 40361-40808 bp Feature: domain Description: dut Location: 40361-40808 bp Feature: gene Location: 40920-41516 bp Feature: domain Description: slmA Location: 40926-41502 bp Feature: domain Description: slmA Location: 4092 6-41502 bp Feature: gene Location: 41562-42521 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41697-42246 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41697-42 2 46 bp Feature: gene Location: 42817-43473 bp Feature: domain Description: pyrE Location: 42835-43468 bp Feature: domain Description: pyrE Location: 42 835-43468 bp Feature: gene Location: 43524-44240 bp Feature: domain Description: rph Location: 43527-44235 bp Feature: domain Description: rph Location: 4352 7-442 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: LSGL01000030.1 Escherichia coli strain ATM460 ATM460_c30, whole genome shotgun sequence (5295 bp)
Overview 1 RT 1: 2200-4965 bp Neighborhood of RT #1 [2200, 4982] RVT-GII GIIM RVT-GII Tra5 Feature: gene Location: 2200-2442 bp Feature: gene Location: 2614-2769 bp Feature: gene Location: 2795-3322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2801-2945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2801-2945 bp Feature: domain Description: GIIM Note: maturase Location: 3029-3245 bp Feature: domain Description: GIIM Note: maturase Location: 3 029-3 245 bp Feature: gene Location: 3332-3604 bp Feature: gene Location: 3621-4748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3921-4578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 921-4578 bp Feature: gene Location: 4761-4982 bp Feature: domain Description: Tra5 Location: 4773-4965 bp Feature: domain Description: Tra5 Location: 4773 -4965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: LSGL01000070.1 Escherichia coli strain ATM460 ATM460_c70, whole genome shotgun sequence (21973 bp)
Overview 1 RT 1: 1169-6183 bp Neighborhood of RT #1 [1169, 6227] RVT-UG5 nitrilase PRK09692 Feature: gene Location: 1169-1312 bp Feature: gene Location: 1318-2007 bp Feature: gene Location: 2004-4043 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2010-2169 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2010-2169 bp Feature: domain Description: nitrilase Location: 3378-3963 bp Feature: domain Description: nitrilase Location: 3378-3963 bp Feature: gene Location: 4331-4879 bp Feature: gene Location: 4971-6227 bp Feature: domain Description: PRK09692 Location: 4980-6183 bp Feature: domain Description: PRK09692 Location: 4 980-6183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), PRK09692 (Integrase; provisional)

Seq: LSGL01000086.1 Escherichia coli strain ATM460 ATM460_c86, whole genome shotgun sequence (10604 bp)
Overview 1 RT 1: 5143-10601 bp Neighborhood of RT #1 [5143, 10601] RVT_N RVT-GII GIIM HNHc Antirestrict DDE_Tnp_1 RVT-GII RVT-GII Feature: gene Location: 5143-5409 bp Feature: gene Location: 5645-5779 bp Feature: gene Location: 5936-7609 bp Feature: domain Description: RVT_N Location: 5984-6227 bp Feature: domain Description: RVT_N Location: 5 984-6227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6272-6917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6272-6917 bp Feature: domain Description: GIIM Note: maturase Location: 6971-7202 bp Feature: domain Description: GIIM Note: maturase Location: 6971-7202 bp Feature: domain Description: HNHc Note: nucleases Location: 7403-7562 bp Feature: domain Description: HNHc Note: nucleases Location: 7403-75 62 bp Feature: gene Location: 7642-7836 bp Feature: gene Location: 7921-8115 bp Feature: gene Location: 8631-9056 bp Feature: domain Description: Antirestrict Location: 8766-9054 bp Feature: domain Description: Antirestrict Location: 8766-905 4 bp Feature: gene Location: 9075-9728 bp Feature: domain Description: DDE_Tnp_1 Location: 9081-9696 bp Feature: domain Description: DDE_Tnp_1 Location: 9081-9696 bp Feature: gene Location: 9754-9957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9862-9952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9862-995 2 bp Feature: gene Location: 10018-10374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10027-10348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10027-10348 bp Feature: gene Location: 10437-10601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Antirestrict (pfam03230), DDE_Tnp_1 (pfam01609)