myRT

myRT report for GCA_001907545.1_ASM190754v1

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Seq: LSGK01000167.1 Escherichia coli strain EC10033 EC10033_c167, whole genome shotgun sequence (6470 bp)
Overview 1 RT 1: 3092-6465 bp Neighborhood of RT #1 [3092, 6467] RVT-GII GIIM RVT-GII Tra5 PRK09409 Feature: gene Location: 3092-3334 bp Feature: gene Location: 3506-3661 bp Feature: gene Location: 3687-4214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3693-3837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3693-3837 bp Feature: domain Description: GIIM Note: maturase Location: 3921-4137 bp Feature: domain Description: GIIM Note: maturase Location: 3921 -41 37 bp Feature: gene Location: 4224-4496 bp Feature: gene Location: 4513-5640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4813-5470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481 3-5470 bp Feature: gene Location: 5653-5874 bp Feature: domain Description: Tra5 Location: 5665-5857 bp Feature: domain Description: Tra5 Location: 5665-5857 bp Feature: gene Location: 6138-6467 bp Feature: domain Description: PRK09409 Location: 6141-6465 bp Feature: domain Description: PRK09409 Location: 61 41 -6465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801), PRK09409 (IS2 transposase TnpB; Reviewed)

Seq: LSGK01000183.1 Escherichia coli strain EC10033 EC10033_c183, whole genome shotgun sequence (19889 bp)
Overview 1 RT 1: 55-4099 bp Neighborhood of RT #1 [55, 4143] RVT-UG5 PRK09692 Feature: gene Location: 55-1959 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 61-220 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 61-2 2 0 bp Feature: gene Location: 2247-2795 bp Feature: gene Location: 2887-4143 bp Feature: domain Description: PRK09692 Location: 2896-4099 bp Feature: domain Description: PRK09692 Location: 2 896-4099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, PRK09692 (Integrase; provisional)

Seq: LSGK01000256.1 Escherichia coli strain EC10033 EC10033_c256, whole genome shotgun sequence (11236 bp)
Overview 1 RT 1: 103-5852 bp Neighborhood of RT #1 [103, 5852] HTH_23 InsE RVT-GII DDE_Tnp_1 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 103-771 bp Feature: domain Description: HTH_23 Location: 211-298 bp Feature: domain Description: HTH_23 Location: 211-298 bp Feature: domain Description: InsE Location: 427-622 bp Feature: domain Description: InsE Location: 427-622 bp Feature: gene Location: 865-1125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868-1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868-1099 bp Feature: gene Location: 1135-1563 bp Feature: gene Location: 1577-2164 bp Feature: domain Description: DDE_Tnp_1 Location: 1583-2132 bp Feature: domain Description: DDE_Tnp_1 Location: 1583 -213 2 bp Feature: gene Location: 3124-3318 bp Feature: gene Location: 3376-3597 bp Feature: gene Location: 3630-5303 bp Feature: domain Description: RVT_N Location: 3678-3921 bp Feature: domain Description: RVT_N Location: 3 678-3 921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3966-4611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 966-4611 bp Feature: domain Description: GIIM Note: maturase Location: 4665-4896 bp Feature: domain Description: GIIM Note: maturase Location: 4665-4896 bp Feature: domain Description: HNHc Note: nucleases Location: 5097-5256 bp Feature: domain Description: HNHc Note: nucleases Location: 5097-5256 bp Feature: gene Location: 5460-5594 bp Feature: gene Location: 5658-5852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507)

Seq: LSGK01000265.1 Escherichia coli strain EC10033 EC10033_c265, whole genome shotgun sequence (7147 bp)
Overview 1 RT 1: 4436-7146 bp Neighborhood of RT #1 [4436, 7146] COG3547 RVT-GII GIIM Feature: gene Location: 4436-4921 bp Feature: domain Description: COG3547 Location: 4454-4907 bp Feature: domain Description: COG354 7 Location: 4 4 54 -4 907 bp Feature: gene Location: 5017-5184 bp Feature: gene Location: 5210-6427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5396-6050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5396-6050 bp Feature: domain Description: GIIM Note: maturase Location: 6128-6350 bp Feature: domain Description: GIIM Note: maturase Location: 6128-6350 bp Feature: gene Location: 6438-6857 bp Feature: gene Location: 6907-7146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: LSGK01000004.1 Escherichia coli strain EC10033 EC10033_c4, whole genome shotgun sequence (68206 bp)
Overview 1 RT 1: 36121-40001 bp Neighborhood of RT #1 [36121, 40006] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 36121-36837 bp Feature: domain Description: rph Location: 36124-36832 bp Feature: domain Description: rph Location: 36124-36832 bp Feature: gene Location: 36888-37544 bp Feature: domain Description: pyrE Location: 36906-37539 bp Feature: domain Description: pyrE Location: 36906-375 39 bp Feature: gene Location: 37840-38799 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37975-38524 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37975 -385 24 bp Feature: gene Location: 38845-39441 bp Feature: domain Description: slmA Location: 38851-39427 bp Feature: domain Description: slmA Location: 3885 1-39427 bp Feature: gene Location: 39548-40006 bp Feature: domain Description: dut Location: 39554-40001 bp Feature: domain Description: dut Location: 395 5 4-40001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)