myRT

myRT report for GCA_001907565.1_ASM190756v1

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Seq: LSGM01000117.1 Escherichia coli strain ATM461 ATM461_c117, whole genome shotgun sequence (11235 bp)
Overview 1 RT 1: 103-5851 bp Neighborhood of RT #1 [103, 5851] HTH_23 InsE RVT-GII RVT_N RVT-GII GIIM HNHc Feature: gene Location: 103-771 bp Feature: domain Description: HTH_23 Location: 211-298 bp Feature: domain Description: HTH_23 Location: 21 1 -298 bp Feature: domain Description: InsE Location: 427-622 bp Feature: domain Description: InsE Location: 427-622 bp Feature: gene Location: 865-1125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868-1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868-1 099 bp Feature: gene Location: 1135-1563 bp Feature: gene Location: 1577-1786 bp Feature: gene Location: 3123-3317 bp Feature: gene Location: 3375-3596 bp Feature: gene Location: 3629-5302 bp Feature: domain Description: RVT_N Location: 3677-3920 bp Feature: domain Description: RVT_N Location: 3677-3920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3965-4610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3965-461 0 bp Feature: domain Description: GIIM Note: maturase Location: 4664-4895 bp Feature: domain Description: GIIM Note: maturase Location: 4664-4895 bp Feature: domain Description: HNHc Note: nucleases Location: 5096-5255 bp Feature: domain Description: HNHc Note: nucleases Location: 5096-5255 bp Feature: gene Location: 5459-5593 bp Feature: gene Location: 5657-5851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), RVT-GII, RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507)

Seq: LSGM01000194.1 Escherichia coli strain ATM461 ATM461_c194, whole genome shotgun sequence (21612 bp)
Overview 1 RT 1: 658-5672 bp Neighborhood of RT #1 [658, 5716] RVT-UG5 nitrilase PRK09692 Feature: gene Location: 658-801 bp Feature: gene Location: 807-1496 bp Feature: gene Location: 1493-3532 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1499-1658 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1499-1658 bp Feature: domain Description: nitrilase Location: 2867-3452 bp Feature: domain Description: nitrilase Location: 2 867-3452 bp Feature: gene Location: 3820-4368 bp Feature: gene Location: 4460-5716 bp Feature: domain Description: PRK09692 Location: 4469-5672 bp Feature: domain Description: PRK09692 Location: 4469-5672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), PRK09692 (Integrase; provisional)

Seq: LSGM01000208.1 Escherichia coli strain ATM461 ATM461_c208, whole genome shotgun sequence (5809 bp)
Overview 1 RT 1: 372-4683 bp Neighborhood of RT #1 [372, 4685] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 372-593 bp Feature: domain Description: Tra5 Location: 384-576 bp Feature: domain Description: Tra5 Location: 3 84-576 bp Feature: gene Location: 606-1733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 906-1563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 906-1563 bp Feature: gene Location: 2032-2559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2038-2182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 8-2182 bp Feature: domain Description: GIIM Note: maturase Location: 2266-2482 bp Feature: domain Description: GIIM Note: maturase Location: 2266-2482 bp Feature: gene Location: 2912-3154 bp Feature: gene Location: 3066-4685 bp Feature: domain Description: ushA Location: 3081-4683 bp Feature: domain Description: ushA Location: 3 081-4683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: LSGM01000062.1 Escherichia coli strain ATM461 ATM461_c62, whole genome shotgun sequence (80092 bp)
Overview 1 RT 1: 35909-39789 bp Neighborhood of RT #1 [35909, 39794] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 35909-36625 bp Feature: domain Description: rph Location: 35912-36620 bp Feature: domain Description: rph Location: 35912-36620 bp Feature: gene Location: 36676-37332 bp Feature: domain Description: pyrE Location: 36694-37327 bp Feature: domain Description: pyrE Location: 36694 -37327 bp Feature: gene Location: 37628-38587 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37763-38312 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37763-38312 bp Feature: gene Location: 38633-39229 bp Feature: domain Description: slmA Location: 38639-39215 bp Feature: domain Description: slmA Location: 38639-39215 bp Feature: gene Location: 39336-39794 bp Feature: domain Description: dut Location: 39342-39789 bp Feature: domain Description: dut Location: 3934 2-39789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: LSGM01000095.1 Escherichia coli strain ATM461 ATM461_c95, whole genome shotgun sequence (7761 bp)
Overview 1 RT 1: 5050-7760 bp Neighborhood of RT #1 [5050, 7760] COG3547 RVT-GII GIIM Feature: gene Location: 5050-5535 bp Feature: domain Description: COG3547 Location: 5068-5521 bp Feature: domain Description: COG35 47 Location: 5 068-5 5 21 bp Feature: gene Location: 5631-5798 bp Feature: gene Location: 5824-7041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6010-6664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6010-6664 bp Feature: domain Description: GIIM Note: maturase Location: 6742-6964 bp Feature: domain Description: GIIM Note: maturase Location: 6742-6964 bp Feature: gene Location: 7052-7471 bp Feature: gene Location: 7521-7760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)