myRT

myRT report for GCA_001908395.1_ASM190839v1

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Seq: CP018743.1 Pseudomonas sp. DRA525 genome (6267580 bp)
Overview 1 RT 1: 3988644-3991817 bp 2 RT 2: 4006454-4015770 bp 3 RT 3: 5104697-5111906 bp Neighborhood of RT #1 [3988644, 3992122] RVT-GII TnpB_IS66 AcrR Neighborhood of RT #2 [4006454, 4015826] PRK05478 PDR_like RVT-GII InsE TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C DDE_Tnp_1 Neighborhood of RT #3 [5104697, 5112520] SSL2 PRK13877 RVT-Retrons SpoVK Peptidases_S8_Subtilisin_like_2 Feature: gene Location: 3988644-3988997 bp Feature: gene Location: 3989402-3989596 bp Feature: gene Location: 3989929-3990216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3990133-3990217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39901 33-399021 7 bp Feature: gene Location: 3990622-3990927 bp Ori: APO85465.1 Feature: domain Description: TnpB_IS66 Location: 3990649-3990802 bp Feature: domain Description: TnpB_IS66 Location: 3990649-3990802 bp Feature: gene Location: 3991421-3992122 bp Ori: APO83352.1 Feature: domain Description: AcrR Location: 3991547-3991817 bp Feature: domain Description: AcrR Location: 3991 547-3991 81 7 bp Feature: gene Location: 4006454-4007854 bp Ori: APO83362.1 Feature: domain Description: PRK05478 Location: 4006457-4007849 bp Feature: domain Description: PRK05478 Location: 4006457-4007849 bp Feature: gene Location: 4008034-4008888 bp Ori: APO83363.1 Feature: domain Description: PDR_like Location: 4008148-4008751 bp Feature: domain Description: PDR_like Location: 40081 48-4008751 bp Feature: gene Location: 4009119-4009562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4009179-4009560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40091 79-4009560 bp Feature: gene Location: 4010372-4010692 bp Ori: APO83364.1 Feature: domain Description: InsE Location: 4010378-4010579 bp Feature: domain Description: InsE Location: 401 0378-401 0579 bp Feature: gene Location: 4010689-4011024 bp Ori: APO83365.1 Feature: domain Description: TnpB_IS66 Location: 4010707-4010995 bp Feature: domain Description: TnpB_IS66 Location: 401 0707-401 0995 bp Feature: gene Location: 4011088-4012404 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4011229-4011442 bp Feature: domain Description: LZ_Tnp_IS66 Location: 401 1 229-401 1 442 bp Feature: domain Description: zf-IS66 Location: 4011463-4011589 bp Feature: domain Description: zf-IS66 Location: 401 1 463-401 1 589 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4011631-4012405 bp Feature: domain Description: DDE_Tnp_IS66 Location: 401 1 631 -401 2405 bp Feature: gene Location: 4012981-4014655 bp Feature: domain Description: RVT_N Location: 4013026-4013269 bp Feature: domain Description: RVT_N Location: 401 3026-401 3269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4013314-4013950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 331 4-401 3950 bp Feature: domain Description: GIIM Note: maturase Location: 4014004-4014235 bp Feature: domain Description: GIIM Note: maturase Location: 401 4004-401 4235 bp Feature: gene Location: 4014748-4014915 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4014841-4014913 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 401 4841 -401 491 3 bp Feature: gene Location: 4014927-4015826 bp Ori: APO83366.1 Feature: domain Description: DDE_Tnp_1 Location: 4015092-4015770 bp Feature: domain Description: DDE_Tnp_1 Location: 401 5092-401 5770 bp Feature: gene Location: 5104697-5106082 bp Ori: APO84281.1 Feature: domain Description: SSL2 Location: 5104703-5105849 bp Feature: domain Description: SSL2 Location: 51 04703-51 05849 bp Feature: gene Location: 5106270-5106617 bp Feature: domain Description: PRK13877 Location: 5106276-5106606 bp Feature: domain Description: PRK1 3877 Location: 51 06276-51 06606 bp Feature: gene Location: 5106716-5108542 bp Ori: APO85499.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5106851-5107550 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51 06851 -51 07550 bp Feature: gene Location: 5109141-5110313 bp Ori: APO84282.1 Feature: domain Description: SpoVK Location: 5109462-5109972 bp Feature: domain Description: SpoVK Location: 51 09462-51 09972 bp Feature: gene Location: 5110310-5112520 bp Ori: APO84283.1 Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 5111129-5111906 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 51 1 1 1 29-51 1 1 906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TnpB_IS66 (pfam05717), AcrR (COG1309), PRK05478 (3-isopropylmalate dehydratase large subunit), PDR_like (cd06185), InsE (COG2963), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655)
GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), DDE_Tnp_1 (pfam01609), SSL2 (COG1061), PRK13877 (conjugal transfer transcriptional regulator TraJ), RVT-Retrons, SpoVK (COG0464), Peptidases_S8_Subtilisin_like_2 (cd04847)