myRT

myRT report for GCA_001909045.1_ASM190904v1

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Seq: LVWH01000165.1 Paenibacillus sp. P3E scaffold_3, whole genome shotgun sequence (162273 bp)
Overview 1 RT 1: 89783-96627 bp Neighborhood of RT #1 [89783, 97391] DUF3243 FAD_oxidored RVT-GII GIIM LdcB SrmB Feature: gene Location: 89783-90118 bp Feature: domain Description: DUF3243 Location: 89885-90113 bp Feature: domain Description: DUF3243 Location: 89885-901 1 3 bp Feature: gene Location: 90309-91880 bp Feature: domain Description: FAD_oxidored Location: 90333-91833 bp Feature: domain Description: FAD_oxidored Location: 90333-91 833 bp Feature: gene Location: 92461-93753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92761-93394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92761 -93394 bp Feature: domain Description: GIIM Note: maturase Location: 93526-93694 bp Feature: domain Description: GIIM Note: maturase Location: 93526-93694 bp Feature: gene Location: 94346-95131 bp Feature: domain Description: LdcB Location: 94538-95099 bp Feature: domain Description: LdcB Location: 94538-95099 bp Feature: gene Location: 95505-97391 bp Feature: domain Description: SrmB Location: 95514-96627 bp Feature: domain Description: SrmB Location: 9551 4-96627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3243 (pfam11588), FAD_oxidored (pfam12831), RVT-GII, GIIM (pfam08388), LdcB (COG1876), SrmB (COG0513)

Seq: LVWH01000088.1 Paenibacillus sp. P3E scaffold_176, whole genome shotgun sequence (2197 bp)
Overview 1 RT 1: 148-1700 bp Neighborhood of RT #1 [148, 1700] RVT-GII GIIM Feature: gene Location: 148-1314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-991 bp Feature: domain Description: GIIM Note: maturase Location: 1030-1243 bp Feature: domain Description: GIIM Note: maturase Location: 1030-12 43 bp Feature: gene Location: 1341-1700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LVWH01000103.1 Paenibacillus sp. P3E scaffold_19, whole genome shotgun sequence (98137 bp)
Overview 1 RT 1: 13830-19847 bp Neighborhood of RT #1 [13830, 19861] QOR1 MarR RVT-GII GIIM BaeS OmpR Feature: gene Location: 13830-14795 bp Feature: domain Description: QOR1 Location: 13833-14748 bp Feature: domain Description: QOR1 Location: 13 83 3 -14748 bp Feature: gene Location: 14969-15424 bp Feature: domain Description: MarR Location: 15050-15377 bp Feature: domain Description: MarR Location: 15050-153 77 bp Feature: gene Location: 15605-16972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15917-16544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15917-16544 bp Feature: domain Description: GIIM Note: maturase Location: 16601-16829 bp Feature: domain Description: GIIM Note: maturase Location: 16601-16829 bp Feature: gene Location: 17705-19159 bp Feature: domain Description: BaeS Location: 18209-19121 bp Feature: domain Description: BaeS Location: 18209-19121 bp Feature: gene Location: 19175-19861 bp Feature: domain Description: OmpR Location: 19184-19847 bp Feature: domain Description: OmpR Location: 19184-19847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QOR1 (cd08241), MarR (pfam01047), RVT-GII, GIIM (pfam08388), BaeS (COG0642), OmpR (COG0745)

Seq: LVWH01000025.1 Paenibacillus sp. P3E scaffold_119, whole genome shotgun sequence (11771 bp)
Overview 1 RT 1: 5517-11771 bp Neighborhood of RT #1 [5517, 11771] OmpR MdoB RVT-GII HNHc Feature: gene Location: 5517-6206 bp Feature: domain Description: OmpR Location: 5526-6192 bp Feature: domain Description: OmpR Location: 5526-6192 bp Feature: gene Location: 6436-8310 bp Feature: domain Description: MdoB Location: 6556-8242 bp Feature: domain Description: MdoB Location: 6556-824 2 bp Feature: gene Location: 8674-10452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8932-9631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8932-9631 bp Feature: domain Description: HNHc Note: nucleases Location: 10186-10324 bp Feature: domain Description: HNHc Note: nucleases Location: 10186-10324 bp Feature: gene Location: 11417-11771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), MdoB (COG1368), RVT-GII, HNHc (smart00507)

Seq: LVWH01000059.1 Paenibacillus sp. P3E scaffold_15, whole genome shotgun sequence (104792 bp)
Overview 1 RT 1: 11508-20781 bp Neighborhood of RT #1 [11508, 20781] RVT-GII Glyco_hydro_10 CBM9_like_1 BID_2 BID_2 SLH SLH SLH Feature: gene Location: 11508-12512 bp Feature: gene Location: 13080-13694 bp Feature: gene Location: 13867-15165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14122-14812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14122-14812 bp Feature: gene Location: 15860-19660 bp Feature: domain Description: Glyco_hydro_10 Location: 16493-17516 bp Feature: domain Description: Glyco_hydro_10 Location: 16493-175 16 bp Feature: domain Description: CBM9_like_1 Location: 17579-18161 bp Feature: domain Description: CBM9_like_1 Location: 175 79-18161 bp Feature: domain Description: BID_2 Location: 18194-18410 bp Feature: domain Description: BID_2 Location: 18194-18410 bp Feature: domain Description: BID_2 Location: 18893-19067 bp Feature: domain Description: BID_2 Location: 18893-19067 bp Feature: domain Description: SLH Location: 19124-19250 bp Feature: domain Description: SLH Location: 19124-1925 0 bp Feature: domain Description: SLH Location: 19301-19430 bp Feature: domain Description: SLH Location: 19301-19430 bp Feature: domain Description: SLH Location: 19496-19628 bp Feature: domain Description: SLH Location: 19496-19628 bp Feature: gene Location: 20306-20781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Glyco_hydro_10 (pfam00331), CBM9_like_1 (cd00005), BID_2 (smart00635), SLH (pfam00395)