myRT

myRT report for GCA_001909605.1_ASM190960v1

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Seq: MPUY01000047.1 Pseudomonas aeruginosa strain 558344 contig_47, whole genome shotgun sequence (36020 bp)
Overview 1 RT 1: 1824-9135 bp Neighborhood of RT #1 [1824, 10190] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1824-2963 bp Ori: OKR65573.1 Feature: domain Description: AAA_21 Location: 1896-1965 bp Feature: domain Description: AAA_21 Location: 1 896-1 965 bp Feature: domain Description: AAA_21 Location: 2439-2769 bp Feature: domain Description: AAA_21 Location: 2439-2769 bp Feature: gene Location: 2963-3520 bp Feature: gene Location: 3517-6537 bp Ori: OKR65575.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4012-4483 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 401 2-4483 bp Feature: gene Location: 7575-8315 bp Ori: OKR65576.1 Feature: domain Description: YeeA Location: 7590-8181 bp Feature: domain Description: YeeA Location: 7590-81 81 bp Feature: gene Location: 8319-10190 bp Ori: OKR65577.1 Feature: domain Description: DUF262 Location: 8367-9135 bp Feature: domain Description: DUF262 Location: 8367-91 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: MPUY01000167.1 Pseudomonas aeruginosa strain 558344 contig_167, whole genome shotgun sequence (43914 bp)
Overview 1 RT 1: 4580-11390 bp Neighborhood of RT #1 [4580, 11587] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4580-5407 bp Ori: OKR54702.1 Feature: domain Description: ABC_phnC Location: 4610-5324 bp Feature: domain Description: ABC_phnC Location: 4610-532 4 bp Feature: gene Location: 5750-6260 bp Feature: domain Description: DUF772 Location: 5900-6095 bp Feature: domain Description: DUF772 Location: 5900-6095 bp Feature: gene Location: 6780-8048 bp Ori: OKR54703.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6993-7650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6993-7650 bp Feature: domain Description: GIIM Note: maturase Location: 7728-7950 bp Feature: domain Description: GIIM Note: maturase Location: 772 8-7950 bp Feature: gene Location: 8198-8524 bp Feature: gene Location: 10043-11587 bp Ori: OKR54704.1 Feature: domain Description: CHD Location: 10259-10673 bp Feature: domain Description: CHD Location: 102 59-10673 bp Feature: domain Description: CHD Location: 10901-11390 bp Feature: domain Description: CHD Location: 10901-11390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: MPUY01000144.1 Pseudomonas aeruginosa strain 558344 contig_144, whole genome shotgun sequence (130186 bp)
Overview 1 RT 1: 84601-89353 bp Neighborhood of RT #1 [84601, 89353] YgfZ RVT_N RVT-GII YkfC HNH SdhE Feature: gene Location: 84601-85545 bp Ori: OKR56711.1 Feature: domain Description: YgfZ Location: 84610-85510 bp Feature: domain Description: YgfZ Location: 84610-85510 bp Feature: gene Location: 86502-86779 bp Feature: gene Location: 86866-88587 bp Ori: OKR56712.1 Feature: domain Description: RVT_N Location: 86923-87160 bp Feature: domain Description: RVT_N Location: 86923 -87160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87211-87847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87211-87847 bp Feature: domain Description: YkfC Location: 88045-88201 bp Feature: domain Description: YkfC Location: 88045-88201 bp Feature: domain Description: HNH Note: nucleases Location: 88384-88522 bp Feature: domain Description: HNH Note: nucleases Location: 883 84-88522 bp Feature: gene Location: 88663-88917 bp Ori: OKR56713.1 Feature: domain Description: SdhE Location: 88669-88909 bp Feature: domain Description: SdhE Location: 88669-88909 bp Feature: gene Location: 88901-89353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YgfZ (COG0354), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: MPUY01000007.1 Pseudomonas aeruginosa strain 558344 contig_7, whole genome shotgun sequence (141445 bp)
Overview 1 RT 1: 50012-58182 bp 2 RT 2: 76406-84742 bp Neighborhood of RT #1 [50012, 58190] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [76406, 84753] PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50012-51028 bp Ori: OKR70216.1 Feature: domain Description: COG3178 Location: 50015-51014 bp Feature: domain Description: COG3178 Location: 50015-51014 bp Feature: gene Location: 51901-52113 bp Feature: gene Location: 52301-54013 bp Ori: OKR70218.1 Feature: domain Description: RVT_N Location: 52358-52601 bp Feature: domain Description: RVT_N Location: 52358-52601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52646-53282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5264 6-53282 bp Feature: domain Description: YkfC Location: 53492-53642 bp Feature: domain Description: YkfC Location: 534 92-5364 2 bp Feature: domain Description: HNH Note: nucleases Location: 53819-53957 bp Feature: domain Description: HNH Note: nucleases Location: 53819-53957 bp Feature: gene Location: 54146-56917 bp Ori: OKR70219.1 Feature: domain Description: LptD Location: 54341-56903 bp Feature: domain Description: LptD Location: 54 34 1-56903 bp Feature: gene Location: 56898-58190 bp Ori: OKR70220.1 Feature: domain Description: PRK10770 Location: 56988-58182 bp Feature: domain Description: PRK10770 Location: 56988-58182 bp Feature: gene Location: 76406-80143 bp Ori: OKR70238.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76514-77171 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76514 -77171 bp Feature: domain Description: PRK09776 Location: 77384-77855 bp Feature: domain Description: PRK09776 Location: 77384 -77855 bp Feature: domain Description: PAS Location: 77912-78437 bp Feature: domain Description: PAS Location: 77912-784 37 bp Feature: domain Description: PRK10060 Location: 78449-80093 bp Feature: domain Description: PRK10060 Location: 784 4 9-80093 bp Feature: gene Location: 80850-81029 bp Feature: gene Location: 81224-82909 bp Ori: OKR70240.1 Feature: domain Description: RVT_N Location: 81281-81521 bp Feature: domain Description: RVT_N Location: 81281-81521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81569-82205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81569-82205 bp Feature: domain Description: GIIM Note: maturase Location: 82259-82490 bp Feature: domain Description: GIIM Note: maturase Location: 82259-824 90 bp Feature: domain Description: HNH Note: nucleases Location: 82742-82880 bp Feature: domain Description: HNH Note: nucleases Location: 8274 2-82880 bp Feature: gene Location: 83237-83373 bp Feature: gene Location: 83632-84753 bp Ori: OKR70241.1 Feature: domain Description: COG3177 Location: 83650-84742 bp Feature: domain Description: COG3177 Location: 83650-84 74 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )