myRT

myRT report for GCA_001910375.1_ASM191037v1

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Seq: MPUV01000055.1 Pseudomonas aeruginosa strain 514747 contig_55, whole genome shotgun sequence (8651 bp)
Overview 1 RT 1: 102-6350 bp Neighborhood of RT #1 [102, 6526] EAL IS5 RVT_N RVT-GII GIIM RVT-GII GIIM DUF772 Feature: gene Location: 102-845 bp Feature: domain Description: EAL Location: 162-822 bp Feature: domain Description: EAL Location: 1 62-822 bp Feature: gene Location: 1514-1972 bp Feature: domain Description: IS5 Location: 1520-1946 bp Feature: domain Description: IS5 Location: 1 520-1 946 bp Feature: gene Location: 2045-3550 bp Feature: RT Description: RVT_N Location: 2126-2351 bp Feature: RT Description: RVT_N Location: 21 26-2351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2402-3044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2402-3044 bp Feature: domain Description: GIIM Note: maturase Location: 3095-3329 bp Feature: domain Description: GIIM Note: maturase Location: 3095-3329 bp Feature: gene Location: 4226-5494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4439-5096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4439-5096 bp Feature: domain Description: GIIM Note: maturase Location: 5174-5396 bp Feature: domain Description: GIIM Note: maturase Location: 51 74-5396 bp Feature: gene Location: 5883-5978 bp Feature: gene Location: 6014-6526 bp Feature: domain Description: DUF772 Location: 6164-6350 bp Feature: domain Description: DUF772 Location: 61 64-6350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EAL (smart00052), IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: MPUV01000020.1 Pseudomonas aeruginosa strain 514747 contig_20, whole genome shotgun sequence (279184 bp)
Overview 1 RT 1: 50137-58337 bp 2 RT 2: 76561-84900 bp Neighborhood of RT #1 [50137, 58345] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [76561, 84911] PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50137-51153 bp Feature: domain Description: COG3178 Location: 50140-51139 bp Feature: domain Description: COG3178 Location: 50140-51139 bp Feature: gene Location: 52026-52238 bp Feature: gene Location: 52426-54138 bp Feature: RT Description: RVT_N Location: 52483-52726 bp Feature: RT Description: RVT_N Location: 52 483-52 72 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52771-53407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 771-53407 bp Feature: domain Description: YkfC Location: 53614-53767 bp Feature: domain Description: YkfC Location: 53614-53767 bp Feature: domain Description: HNH Note: nucleases Location: 53944-54082 bp Feature: domain Description: HNH Note: nucleases Location: 53944-54082 bp Feature: gene Location: 54271-57072 bp Feature: domain Description: LptD Location: 54466-57058 bp Feature: domain Description: LptD Location: 54466-57058 bp Feature: gene Location: 57053-58345 bp Feature: domain Description: PRK10770 Location: 57143-58337 bp Feature: domain Description: PRK10770 Location: 57143-58337 bp Feature: gene Location: 76561-80298 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76669-77326 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76669-7732 6 bp Feature: domain Description: PRK09776 Location: 77539-78010 bp Feature: domain Description: PRK09776 Location: 77539-78010 bp Feature: domain Description: PAS Location: 78055-78592 bp Feature: domain Description: PAS Location: 78055-78592 bp Feature: domain Description: PRK10060 Location: 78601-80248 bp Feature: domain Description: PRK10060 Location: 78601-802 48 bp Feature: gene Location: 81005-81184 bp Feature: gene Location: 81379-83064 bp Feature: RT Description: RVT_N Location: 81436-81676 bp Feature: RT Description: RVT_N Location: 81436-81676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81724-82360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8172 4-82 360 bp Feature: domain Description: GIIM Note: maturase Location: 82414-82645 bp Feature: domain Description: GIIM Note: maturase Location: 82 414-82 645 bp Feature: domain Description: HNH Note: nucleases Location: 82897-83035 bp Feature: domain Description: HNH Note: nucleases Location: 82 897-83035 bp Feature: gene Location: 83367-83528 bp Feature: gene Location: 83790-84911 bp Feature: domain Description: COG3177 Location: 83808-84900 bp Feature: domain Description: COG3177 Location: 83808-84900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )