myRT

myRT report for GCA_001910465.1_ASM191046v1

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Seq: MOMK01000195.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-62 NZ62_pilon_scaffolds_0195, whole genome shotgun sequence (5148 bp)
Overview 1 RT 1: 554-3458 bp Neighborhood of RT #1 [554, 3458] RVT-UG9 UvrD_C Feature: gene Location: 554-1465 bp Ori: OKS47492.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 557-713 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 557-71 3 bp Feature: gene Location: 1563-2153 bp Ori: OKS47493.1 Feature: domain Description: UvrD_C Location: 1887-2082 bp Feature: domain Description: UvrD_C Location: 1 887-2082 bp Feature: gene Location: 2514-3458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: MOMK01000260.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-62 NZ62_pilon_scaffolds_0260, whole genome shotgun sequence (1443 bp)
Overview 1 RT 1: 1-1444 bp Neighborhood of RT #1 [1, 1443] HTH_32 HTH_Tnp_1 HTH_Tnp_1 RVT-GII Feature: gene Location: 1-351 bp Feature: domain Description: HTH_32 Location: 79-301 bp Feature: domain Description: HTH_32 Location: 79-301 bp Feature: gene Location: 378-836 bp Ori: OKS47074.1 Feature: domain Description: HTH_Tnp_1 Location: 405-510 bp Feature: domain Description: HTH_Tnp_1 Location: 405-510 bp Feature: domain Description: HTH_Tnp_1 Location: 516-741 bp Feature: domain Description: HTH_Tnp_1 Location: 516-741 bp Feature: gene Location: 955-1443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030-1444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030-1444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), HTH_Tnp_1 (pfam01527), RVT-GII

Seq: MOMK01000041.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-62 NZ62_pilon_scaffolds_0041, whole genome shotgun sequence (48769 bp)
Overview 1 RT 1: 1-6719 bp Neighborhood of RT #1 [1, 6808] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold trans_reg_C Feature: gene Location: 1-385 bp Feature: gene Location: 425-1609 bp Feature: domain Description: COG3666 Location: 467-908 bp Feature: domain Description: COG3 666 Location: 467-908 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1385-1592 bp Feature: domain Description: DDE_Tnp_1_6 Location: 13 85-1592 bp Feature: gene Location: 2107-3816 bp Ori: OKS55108.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2260-2857 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2260-2857 bp Feature: gene Location: 4260-5678 bp Ori: OKS55109.1 Feature: domain Description: ComA-like_MBL-fold Location: 4809-5295 bp Feature: domain Description: ComA-like_MBL-fold Location: 4809-5295 bp Feature: gene Location: 6485-6808 bp Feature: domain Description: trans_reg_C Location: 6509-6719 bp Feature: domain Description: trans_reg_C Location: 6509-6719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731), trans_reg_C (cd00383)

Seq: MOMK01000059.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-62 NZ62_pilon_scaffolds_0059, whole genome shotgun sequence (38009 bp)
Overview 1 RT 1: 30513-36449 bp Neighborhood of RT #1 [30513, 36484] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30513-31601 bp Ori: OKS53219.1 Feature: domain Description: modC_ABC Location: 30528-31593 bp Feature: domain Description: modC_ABC Location: 30528-31593 bp Feature: gene Location: 31690-32745 bp Ori: OKS53220.1 Feature: domain Description: Top1 Location: 31723-32737 bp Feature: domain Description: Top1 Location: 31723-32737 bp Feature: gene Location: 33576-35411 bp Ori: OKS53221.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33837-34650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33837-34 650 bp Feature: domain Description: Intron_maturas2 Location: 34746-35061 bp Feature: domain Description: Intron_maturas2 Location: 34 74 6-35061 bp Feature: domain Description: HNHc Note: nucleases Location: 35184-35349 bp Feature: domain Description: HNHc Note: nucleases Location: 35184 -3534 9 bp Feature: gene Location: 35651-35842 bp Feature: gene Location: 35849-36484 bp Ori: OKS53223.1 Feature: domain Description: DUF2625 Location: 35861-36449 bp Feature: domain Description: DUF2625 Location: 35861-364 4 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: MOMK01000252.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-62 NZ62_pilon_scaffolds_0252, whole genome shotgun sequence (1756 bp)
Overview 1 RT 1: 1-1111 bp Neighborhood of RT #1 [1, 1252] RVT-GII GIIM Feature: gene Location: 1-1252 bp Ori: OKS47108.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-85 6 bp Feature: domain Description: GIIM Note: maturase Location: 901-1111 bp Feature: domain Description: GIIM Note: maturase Location: 901-1111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOMK01000251.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-62 NZ62_pilon_scaffolds_0251, whole genome shotgun sequence (1760 bp)
Overview 1 RT 1: 489-1650 bp Neighborhood of RT #1 [489, 1757] RVT-GII GIIM Feature: gene Location: 489-1757 bp Ori: OKS47109.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 93-1350 bp Feature: domain Description: GIIM Note: maturase Location: 1428-1650 bp Feature: domain Description: GIIM Note: maturase Location: 1428-16 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOMK01000313.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-62 NZ62_pilon_scaffolds_0313, whole genome shotgun sequence (653 bp)
Overview 1 RT 1: 1-630 bp Neighborhood of RT #1 [1, 653] RVT-GII Feature: gene Location: 1-385 bp Feature: gene Location: 423-653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII