myRT

myRT report for GCA_001910485.1_ASM191048v1

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Seq: MOMJ01000246.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-66 NZ66_pilon_scaffolds_0246, whole genome shotgun sequence (1756 bp)
Overview 1 RT 1: 1-1111 bp Neighborhood of RT #1 [1, 1252] RVT-GII GIIM Feature: gene Location: 1-1252 bp Ori: OKS47065.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 -856 bp Feature: domain Description: GIIM Note: maturase Location: 901-1111 bp Feature: domain Description: GIIM Note: maturase Location: 901 -1 1 1 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOMJ01000194.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-66 NZ66_pilon_scaffolds_0194, whole genome shotgun sequence (5002 bp)
Overview 1 RT 1: 441-3345 bp Neighborhood of RT #1 [441, 3345] RVT-UG9 UvrD_C Feature: gene Location: 441-1352 bp Ori: OKS47349.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 444-600 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 444-600 bp Feature: gene Location: 1450-2040 bp Ori: OKS47350.1 Feature: domain Description: UvrD_C Location: 1774-1969 bp Feature: domain Description: UvrD_C Location: 1774-1969 bp Feature: gene Location: 2401-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: MOMJ01000041.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-66 NZ66_pilon_scaffolds_0041, whole genome shotgun sequence (48769 bp)
Overview 1 RT 1: 1-6719 bp Neighborhood of RT #1 [1, 6808] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold trans_reg_C Feature: gene Location: 1-385 bp Feature: gene Location: 425-1609 bp Feature: domain Description: COG3666 Location: 467-908 bp Feature: domain Description: COG3 666 Location: 467-908 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1385-1592 bp Feature: domain Description: DDE_Tnp_1_6 Location: 13 85-1592 bp Feature: gene Location: 2107-3816 bp Ori: OKS53732.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2260-2857 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2260-2857 bp Feature: gene Location: 4260-5678 bp Ori: OKS53733.1 Feature: domain Description: ComA-like_MBL-fold Location: 4809-5295 bp Feature: domain Description: ComA-like_MBL-fold Location: 4809-5295 bp Feature: gene Location: 6485-6808 bp Feature: domain Description: trans_reg_C Location: 6509-6719 bp Feature: domain Description: trans_reg_C Location: 6509-6719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731), trans_reg_C (cd00383)

Seq: MOMJ01000248.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-66 NZ66_pilon_scaffolds_0248, whole genome shotgun sequence (1701 bp)
Overview 1 RT 1: 4-1165 bp Neighborhood of RT #1 [4, 1272] RVT-GII GIIM Feature: gene Location: 4-1272 bp Ori: OKS47061.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 94 3-1165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOMJ01000306.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-66 NZ66_pilon_scaffolds_0306, whole genome shotgun sequence (653 bp)
Overview 1 RT 1: 1-630 bp Neighborhood of RT #1 [1, 653] RVT-GII Feature: gene Location: 1-385 bp Feature: gene Location: 423-653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MOMJ01000059.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-66 NZ66_pilon_scaffolds_0059, whole genome shotgun sequence (38009 bp)
Overview 1 RT 1: 30513-36449 bp Neighborhood of RT #1 [30513, 36484] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30513-31601 bp Ori: OKS52086.1 Feature: domain Description: modC_ABC Location: 30528-31593 bp Feature: domain Description: modC_ABC Location: 30528-31593 bp Feature: gene Location: 31690-32745 bp Ori: OKS52087.1 Feature: domain Description: Top1 Location: 31723-32737 bp Feature: domain Description: Top1 Location: 31723-32737 bp Feature: gene Location: 33576-35411 bp Ori: OKS52088.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33837-34650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33837-346 50 bp Feature: domain Description: Intron_maturas2 Location: 34746-35061 bp Feature: domain Description: Intron_maturas2 Location: 34746 -3506 1 bp Feature: domain Description: HNHc Note: nucleases Location: 35184-35349 bp Feature: domain Description: HNHc Note: nucleases Location: 35184-35349 bp Feature: gene Location: 35651-35842 bp Feature: gene Location: 35849-36484 bp Ori: OKS52090.1 Feature: domain Description: DUF2625 Location: 35861-36449 bp Feature: domain Description: DUF26 25 Location: 3586 1-36 449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: MOMJ01000311.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-66 NZ66_pilon_scaffolds_0311, whole genome shotgun sequence (622 bp)
Overview 1 RT 1: 134-623 bp Neighborhood of RT #1 [134, 622] RVT-GII Feature: gene Location: 134-622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209-623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209-623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII