myRT

myRT report for GCA_001910495.1_ASM191049v1

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Seq: MOML01000367.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-63 NZ63_pilon_scaffolds_0367, whole genome shotgun sequence (653 bp)
Overview 1 RT 1: 1-630 bp Neighborhood of RT #1 [1, 653] RVT-GII Feature: gene Location: 1-385 bp Feature: gene Location: 423-653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MOML01000057.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-63 NZ63_pilon_scaffolds_0057, whole genome shotgun sequence (37935 bp)
Overview 1 RT 1: 30439-36375 bp Neighborhood of RT #1 [30439, 36410] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30439-31527 bp Ori: OKS57355.1 Feature: domain Description: modC_ABC Location: 30454-31519 bp Feature: domain Description: modC_ABC Location: 30454-31519 bp Feature: gene Location: 31616-32671 bp Ori: OKS57356.1 Feature: domain Description: Top1 Location: 31649-32663 bp Feature: domain Description: Top1 Location: 31649-32 663 bp Feature: gene Location: 33502-35337 bp Ori: OKS57357.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33763-34576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33763-34576 bp Feature: domain Description: Intron_maturas2 Location: 34672-34987 bp Feature: domain Description: Intron_maturas2 Location: 34672 -34987 bp Feature: domain Description: HNHc Note: nucleases Location: 35110-35275 bp Feature: domain Description: HNHc Note: nucleases Location: 35110-352 75 bp Feature: gene Location: 35577-35768 bp Feature: gene Location: 35775-36410 bp Ori: OKS57359.1 Feature: domain Description: DUF2625 Location: 35787-36375 bp Feature: domain Description: DUF2 62 5 Location: 35787-36375 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: MOML01000277.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-63 NZ63_pilon_scaffolds_0277, whole genome shotgun sequence (1659 bp)
Overview 1 RT 1: 388-1549 bp Neighborhood of RT #1 [388, 1656] RVT-GII GIIM Feature: gene Location: 388-1656 bp Ori: OKS47463.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592-1249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592-1249 bp Feature: domain Description: GIIM Note: maturase Location: 1327-1549 bp Feature: domain Description: GIIM Note: maturase Location: 13 27-1549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOML01000273.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-63 NZ63_pilon_scaffolds_0273, whole genome shotgun sequence (1756 bp)
Overview 1 RT 1: 505-1615 bp Neighborhood of RT #1 [505, 1756] RVT-GII GIIM Feature: gene Location: 505-1756 bp Ori: OKS47491.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 5-1360 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Feature: domain Description: GIIM Note: maturase Location: 14 05-1615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOML01000210.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-63 NZ63_pilon_scaffolds_0210, whole genome shotgun sequence (5002 bp)
Overview 1 RT 1: 441-3345 bp Neighborhood of RT #1 [441, 3345] RVT-UG9 UvrD_C Feature: gene Location: 441-1352 bp Ori: OKS48204.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 444-600 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 444-600 bp Feature: gene Location: 1450-2040 bp Ori: OKS48205.1 Feature: domain Description: UvrD_C Location: 1774-1969 bp Feature: domain Description: UvrD_C Location: 1774-1969 bp Feature: gene Location: 2401-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: MOML01000281.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-63 NZ63_pilon_scaffolds_0281, whole genome shotgun sequence (1540 bp)
Overview 1 RT 1: 378-1537 bp Neighborhood of RT #1 [378, 1540] HTH_Tnp_1 HTH_Tnp_1 RVT-GII Feature: gene Location: 378-878 bp Ori: OKS47432.1 Feature: domain Description: HTH_Tnp_1 Location: 390-549 bp Feature: domain Description: HTH_Tnp_1 Location: 390-549 bp Feature: domain Description: HTH_Tnp_1 Location: 558-783 bp Feature: domain Description: HTH_Tnp_1 Location: 558-783 bp Feature: gene Location: 955-1540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030-1537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030-1537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-GII

Seq: MOML01000040.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-63 NZ63_pilon_scaffolds_0040, whole genome shotgun sequence (48769 bp)
Overview 1 RT 1: 1-2857 bp Neighborhood of RT #1 [1, 3816] COG3666 DDE_Tnp_1_6 RVT-Retrons Feature: gene Location: 1-385 bp Feature: gene Location: 425-1609 bp Feature: domain Description: COG3666 Location: 467-908 bp Feature: domain Description: COG3666 Location: 467 -908 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1385-1592 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1385-1592 bp Feature: gene Location: 2107-3816 bp Ori: OKS60069.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2260-2857 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2260-2857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons