myRT

myRT report for GCA_001910545.1_ASM191054v1

Download annotations/find similar RTs

Seq: MOMM01000288.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-64 NZ64_pilon_scaffolds_0288, whole genome shotgun sequence (1760 bp)
Overview 1 RT 1: 489-1650 bp Neighborhood of RT #1 [489, 1757] RVT-GII GIIM Feature: gene Location: 489-1757 bp Ori: OKS63474.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693-1 350 bp Feature: domain Description: GIIM Note: maturase Location: 1428-1650 bp Feature: domain Description: GIIM Note: maturase Location: 1 428-1 650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOMM01000222.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-64 NZ64_pilon_scaffolds_0222, whole genome shotgun sequence (4927 bp)
Overview 1 RT 1: 367-3271 bp Neighborhood of RT #1 [367, 3271] RVT-UG9 UvrD_C Feature: gene Location: 367-1278 bp Ori: OKS64030.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 370-526 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 370-52 6 bp Feature: gene Location: 1376-1966 bp Ori: OKS64031.1 Feature: domain Description: UvrD_C Location: 1700-1895 bp Feature: domain Description: UvrD_C Location: 1700-1895 bp Feature: gene Location: 2327-3271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: MOMM01000040.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-64 NZ64_pilon_scaffolds_0040, whole genome shotgun sequence (49005 bp)
Overview 1 RT 1: 1-6719 bp Neighborhood of RT #1 [1, 6808] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold trans_reg_C Feature: gene Location: 1-385 bp Feature: gene Location: 425-1609 bp Feature: domain Description: COG3666 Location: 467-908 bp Feature: domain Description: COG3 666 Location: 467-908 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1385-1592 bp Feature: domain Description: DDE_Tnp_1_6 Location: 13 85-1592 bp Feature: gene Location: 2107-3816 bp Ori: OKS74323.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2260-2857 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2260-2857 bp Feature: gene Location: 4260-5678 bp Ori: OKS74324.1 Feature: domain Description: ComA-like_MBL-fold Location: 4809-5295 bp Feature: domain Description: ComA-like_MBL-fold Location: 4809-5295 bp Feature: gene Location: 6485-6808 bp Feature: domain Description: trans_reg_C Location: 6509-6719 bp Feature: domain Description: trans_reg_C Location: 6509-6719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731), trans_reg_C (cd00383)

Seq: MOMM01000289.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-64 NZ64_pilon_scaffolds_0289, whole genome shotgun sequence (1756 bp)
Overview 1 RT 1: 1-1111 bp Neighborhood of RT #1 [1, 1252] RVT-GII GIIM Feature: gene Location: 1-1252 bp Ori: OKS63473.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 1-856 bp Feature: domain Description: GIIM Note: maturase Location: 901-1111 bp Feature: domain Description: GIIM Note: maturase Location: 901-1111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MOMM01000382.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-64 NZ64_pilon_scaffolds_0382, whole genome shotgun sequence (533 bp)
Overview 1 RT 1: 1-510 bp Neighborhood of RT #1 [1, 533] RVT-GII Feature: gene Location: 1-265 bp Feature: gene Location: 303-533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309-510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309-5 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MOMM01000060.1 Pseudomonas syringae pv. actinidiae strain Psa NZ-64 NZ64_pilon_scaffolds_0060, whole genome shotgun sequence (38009 bp)
Overview 1 RT 1: 30513-36449 bp Neighborhood of RT #1 [30513, 36484] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 30513-31601 bp Ori: OKS72717.1 Feature: domain Description: modC_ABC Location: 30528-31593 bp Feature: domain Description: modC_ABC Location: 30528-31593 bp Feature: gene Location: 31690-32745 bp Ori: OKS72718.1 Feature: domain Description: Top1 Location: 31723-32737 bp Feature: domain Description: Top1 Location: 31723-32737 bp Feature: gene Location: 33576-35411 bp Ori: OKS72719.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33837-34650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33837-346 50 bp Feature: domain Description: Intron_maturas2 Location: 34746-35061 bp Feature: domain Description: Intron_maturas2 Location: 34746 -3506 1 bp Feature: domain Description: HNHc Note: nucleases Location: 35184-35349 bp Feature: domain Description: HNHc Note: nucleases Location: 35184-35349 bp Feature: gene Location: 35651-35842 bp Feature: gene Location: 35849-36484 bp Ori: OKS72721.1 Feature: domain Description: DUF2625 Location: 35861-36449 bp Feature: domain Description: DUF26 25 Location: 3586 1-36 449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)