myRT

myRT report for GCA_001911015.1_ASM191101v1

Download annotations/find similar RTs

Seq: LRKK01000052.1 Escherichia coli strain 200244 ctg7180000007107, whole genome shotgun sequence (196931 bp)
Overview 1 RT 1: 17391-22028 bp Neighborhood of RT #1 [17391, 22028] HTH_XRE RVT-Retrons PRK13889 Feature: gene Location: 17391-17606 bp Feature: gene Location: 17697-17978 bp Ori: OKV37687.1 Feature: domain Description: HTH_XRE Location: 17712-17877 bp Feature: domain Description: HTH_XRE Location: 1 771 2-1 7877 bp Feature: gene Location: 17971-19071 bp Ori: OKV37688.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18112-18664 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 81 1 2-1 8664 bp Feature: gene Location: 19148-20650 bp Ori: OKV37689.1 Feature: domain Description: PRK13889 Location: 19151-19730 bp Feature: domain Description: PRK1 3889 Location: 1 91 51 -1 9730 bp Feature: gene Location: 21591-22028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional)

Seq: LRKK01000053.1 Escherichia coli strain 200244 ctg7180000007109, whole genome shotgun sequence (117618 bp)
Overview 1 RT 1: 9834-13147 bp Neighborhood of RT #1 [9834, 13147] PHA02517 RVT-GII GIIM Feature: gene Location: 9834-10316 bp Feature: gene Location: 10392-10881 bp Feature: domain Description: PHA02517 Location: 10395-10857 bp Feature: domain Description: PHA02 517 Location: 10395-10857 bp Feature: gene Location: 10962-12485 bp Ori: OKV37445.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11235-11967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 35-11967 bp Feature: domain Description: GIIM Note: maturase Location: 12042-12240 bp Feature: domain Description: GIIM Note: maturase Location: 12 042 -12 2 40 bp Feature: gene Location: 12439-12864 bp Feature: gene Location: 12899-13147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)