myRT

myRT report for GCA_001911155.1_ASM191115v1

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Seq: LRLD01000134.1 Escherichia coli strain 102878 ctg7180000016089, whole genome shotgun sequence (221108 bp)
Overview 1 RT 1: 43915-48552 bp 2 RT 2: 113310-116623 bp Neighborhood of RT #1 [43915, 48552] PRK13889 RVT-Retrons HTH_XRE Neighborhood of RT #2 [113310, 116623] PHA02517 RVT-GII GIIM Feature: gene Location: 43915-44352 bp Feature: gene Location: 45293-46795 bp Ori: OKW27703.1 Feature: domain Description: PRK13889 Location: 45296-45875 bp Feature: domain Description: PRK1 3889 Location: 45296-45875 bp Feature: gene Location: 46872-47972 bp Ori: OKW27704.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47013-47565 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4701 3-47565 bp Feature: gene Location: 47965-48246 bp Ori: OKW27705.1 Feature: domain Description: HTH_XRE Location: 47980-48145 bp Feature: domain Description: HTH_XRE Location: 47980-481 45 bp Feature: gene Location: 48337-48552 bp Feature: gene Location: 113310-113792 bp Feature: gene Location: 113868-114357 bp Feature: domain Description: PHA02517 Location: 113871-114333 bp Feature: domain Description: PHA0251 7 Location: 1 1 3871 -1 1 4333 bp Feature: gene Location: 114438-115961 bp Ori: OKW27772.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114711-115443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 471 1 -1 1 5443 bp Feature: domain Description: GIIM Note: maturase Location: 115518-115716 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 551 8-1 1 571 6 bp Feature: gene Location: 115915-116340 bp Feature: gene Location: 116375-116623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)