myRT

myRT report for GCA_001911315.1_ASM191131v1

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Seq: LRLU01000138.1 Escherichia coli strain 403456 ctg7180000022171, whole genome shotgun sequence (2012 bp)
Overview 1 RT 1: 87-1564 bp Neighborhood of RT #1 [87, 1564] InsE RVT-GII RVT-GII Feature: gene Location: 87-203 bp Feature: domain Description: InsE Location: 90-201 bp Feature: domain Description: InsE Location: 90-201 bp Feature: gene Location: 165-266 bp Feature: gene Location: 259-741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-637 bp Feature: gene Location: 725-988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 734-968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 734-968 bp Feature: gene Location: 1172-1429 bp Feature: gene Location: 1319-1564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII

Seq: LRLU01000184.1 Escherichia coli strain 403456 ctg7180000022217, whole genome shotgun sequence (17600 bp)
Overview 1 RT 1: 10650-15256 bp Neighborhood of RT #1 [10650, 15256] RVT_N RVT-GII GIIM HNHc DUF1472 ArdA Feature: gene Location: 10650-10895 bp Feature: gene Location: 11044-11232 bp Feature: gene Location: 11765-13441 bp Ori: OKX37555.1 Feature: domain Description: RVT_N Location: 11822-12059 bp Feature: domain Description: RVT_N Location: 1182 2 -12 059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12110-12752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 110-12 752 bp Feature: domain Description: GIIM Note: maturase Location: 12803-13037 bp Feature: domain Description: GIIM Note: maturase Location: 12 803-13037 bp Feature: domain Description: HNHc Note: nucleases Location: 13247-13406 bp Feature: domain Description: HNHc Note: nucleases Location: 132 47-13406 bp Feature: gene Location: 13698-14492 bp Ori: OKX37561.1 Feature: domain Description: DUF1472 Location: 13701-13923 bp Feature: domain Description: DUF1472 Location: 13701-1392 3 bp Feature: domain Description: ArdA Location: 14016-14481 bp Feature: domain Description: ArdA Location: 14016-14481 bp Feature: gene Location: 14660-15256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1472 (pfam07339), ArdA (pfam07275)

Seq: LRLU01000231.1 Escherichia coli strain 403456 ctg7180000022264, whole genome shotgun sequence (26683 bp)
Overview 1 RT 1: 468-7014 bp Neighborhood of RT #1 [468, 7280] Psu RVT-UG5 nitrilase PRK09692 HTH_XRE Feature: gene Location: 468-1025 bp Ori: OKX30882.1 Feature: domain Description: Psu Location: 486-1008 bp Feature: domain Description: Psu Location: 486-1008 bp Feature: gene Location: 1227-1916 bp Feature: gene Location: 1913-4789 bp Ori: OKX30884.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2387-2915 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23 87-2915 bp Feature: domain Description: nitrilase Location: 4127-4709 bp Feature: domain Description: nitrilase Location: 4127-4709 bp Feature: gene Location: 4882-6138 bp Ori: OKX30885.1 Feature: domain Description: PRK09692 Location: 4891-6094 bp Feature: domain Description: PRK09692 Location: 4891-6094 bp Feature: gene Location: 6816-7280 bp Ori: OKX30905.1 Feature: domain Description: HTH_XRE Location: 6846-7014 bp Feature: domain Description: HTH_XRE Location: 6846-7014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), RVT-UG5, nitrilase (cl11424), PRK09692 (Integrase; provisional), HTH_XRE (smart00530)

Seq: LRLU01000144.1 Escherichia coli strain 403456 ctg7180000022177, whole genome shotgun sequence (1951 bp)
Overview 1 RT 1: 93-1951 bp Neighborhood of RT #1 [93, 1951] RVT-GII GIIM Feature: gene Location: 93-1616 bp Ori: OKX43166.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1570-1951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LRLU01000158.1 Escherichia coli strain 403456 ctg7180000022191, whole genome shotgun sequence (1913 bp)
Overview 1 RT 1: 93-1913 bp Neighborhood of RT #1 [93, 1913] RVT-GII GIIM Feature: gene Location: 93-1616 bp Ori: OKX41868.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1570-1913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)