myRT

myRT report for GCA_001911405.1_ASM191140v1

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Seq: LRMC01000169.1 Escherichia coli strain 103199 ctg7180000008453, whole genome shotgun sequence (303355 bp)
Overview 1 RT 1: 310-3714 bp Neighborhood of RT #1 [310, 3714] RVT-GII GIIM YhhI YhhI YhhI Feature: gene Location: 310-1521 bp Ori: OKX49307.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475-1132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475-1 1 32 bp Feature: domain Description: GIIM Note: maturase Location: 1222-1429 bp Feature: domain Description: GIIM Note: maturase Location: 1 222-1 429 bp Feature: gene Location: 1728-2864 bp Ori: OKX49032.1 Feature: domain Description: YhhI Location: 1731-2094 bp Feature: domain Description: YhhI Location: 1 731 -2094 bp Feature: domain Description: YhhI Location: 2151-2505 bp Feature: domain Description: YhhI Location: 21 51 -2505 bp Feature: domain Description: YhhI Location: 2523-2766 bp Feature: domain Description: YhhI Location: 2523-2766 bp Feature: gene Location: 3079-3714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YhhI (COG5433)

Seq: LRMC01000165.1 Escherichia coli strain 103199 ctg7180000008449, whole genome shotgun sequence (7034 bp)
Overview 1 RT 1: 1300-7032 bp Neighborhood of RT #1 [1300, 7034] PAAR_2 RhsA RHS_repeat RhsA RhsA RVT-GII Feature: gene Location: 1300-5520 bp Ori: OKX49662.1 Feature: domain Description: PAAR_2 Location: 1306-1387 bp Feature: domain Description: PAAR_2 Location: 1306-1387 bp Feature: domain Description: RhsA Location: 1900-2314 bp Feature: domain Description: RhsA Location: 1900-2 314 bp Feature: domain Description: RHS_repeat Location: 2395-2485 bp Feature: domain Description: RHS_repeat Location: 2 395-2 485 bp Feature: domain Description: RhsA Location: 2554-2860 bp Feature: domain Description: RhsA Location: 2 554-2 860 bp Feature: domain Description: RhsA Location: 2917-5086 bp Feature: domain Description: RhsA Location: 2 917-5086 bp Feature: gene Location: 5521-5919 bp Feature: gene Location: 6558-7034 bp Ori: OKX49664.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6834-7032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6834-7032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_2 (cd14738), RhsA (COG3209), RHS_repeat (pfam05593), RVT-GII

Seq: LRMC01000152.1 Escherichia coli strain 103199 ctg7180000008435, whole genome shotgun sequence (13598 bp)
Overview 1 RT 1: 1449-5366 bp Neighborhood of RT #1 [1449, 5371] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 1449-1528 bp Feature: gene Location: 1690-1896 bp Feature: gene Location: 2545-4446 bp Ori: OKX51019.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2812-3643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2812-3 643 bp Feature: domain Description: Intron_maturas2 Location: 3757-4015 bp Feature: domain Description: Intron_maturas2 Location: 3 757-4015 bp Feature: domain Description: HNHc Note: nucleases Location: 4189-4351 bp Feature: domain Description: HNHc Note: nucleases Location: 4189-43 51 bp Feature: gene Location: 4596-5081 bp Ori: OKX51020.1 Feature: domain Description: PRK13732 Location: 4599-5079 bp Feature: domain Description: PRK13 73 2 Location: 4599-5079 bp Feature: gene Location: 5138-5371 bp Ori: OKX51021.1 Feature: domain Description: DUF905 Location: 5168-5366 bp Feature: domain Description: DUF905 Location: 5168-53 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: LRMC01000096.1 Escherichia coli strain 103199 ctg7180000008381, whole genome shotgun sequence (6521 bp)
Overview 1 RT 1: 1450-5367 bp Neighborhood of RT #1 [1450, 5372] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 1450-1529 bp Feature: gene Location: 1691-1897 bp Feature: gene Location: 2546-4447 bp Ori: OKX58012.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2813-3644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2813-364 4 bp Feature: domain Description: Intron_maturas2 Location: 3758-4016 bp Feature: domain Description: Intron_maturas2 Location: 3758-4 016 bp Feature: domain Description: HNHc Note: nucleases Location: 4190-4352 bp Feature: domain Description: HNHc Note: nucleases Location: 4 190-4 352 bp Feature: gene Location: 4597-5082 bp Ori: OKX58013.1 Feature: domain Description: PRK13732 Location: 4600-5080 bp Feature: domain Description: PRK13732 Location: 4 600-5080 bp Feature: gene Location: 5139-5372 bp Ori: OKX58014.1 Feature: domain Description: DUF905 Location: 5169-5367 bp Feature: domain Description: DUF905 Location: 5169-5367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: LRMC01000176.1 Escherichia coli strain 103199 ctg7180000008463, whole genome shotgun sequence (35236 bp)
Overview 1 RT 1: 30172-34082 bp Neighborhood of RT #1 [30172, 34087] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 30172-30240 bp Feature: gene Location: 30406-30612 bp Feature: gene Location: 31261-33162 bp Ori: OKX47979.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31528-32359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315 28-3235 9 bp Feature: domain Description: Intron_maturas2 Location: 32473-32731 bp Feature: domain Description: Intron_maturas2 Location: 32473-32731 bp Feature: domain Description: HNHc Note: nucleases Location: 32905-33067 bp Feature: domain Description: HNHc Note: nucleases Location: 32905 -33067 bp Feature: gene Location: 33312-33797 bp Ori: OKX47980.1 Feature: domain Description: PRK13732 Location: 33315-33795 bp Feature: domain Description: PRK13732 Location: 33315 -33795 bp Feature: gene Location: 33854-34087 bp Ori: OKX47981.1 Feature: domain Description: DUF905 Location: 33884-34082 bp Feature: domain Description: DUF905 Location: 33884-34082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: LRMC01000088.1 Escherichia coli strain 103199 ctg7180000008373, whole genome shotgun sequence (2023 bp)
Overview 1 RT 1: 1-1622 bp Neighborhood of RT #1 [1, 1714] RVT-GII GIIM Feature: gene Location: 1-427 bp Feature: gene Location: 503-1714 bp Ori: OKX58278.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 668-1325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 6 8-1325 bp Feature: domain Description: GIIM Note: maturase Location: 1415-1622 bp Feature: domain Description: GIIM Note: maturase Location: 1415-16 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)