myRT

myRT report for GCA_001911805.1_ASM191180v1

Download annotations/find similar RTs

Seq: LGMS01000190.1 Escherichia coli strain 100664 ctg7180000013536, whole genome shotgun sequence (11661 bp)
Overview 1 RT 1: 5406-11351 bp Neighborhood of RT #1 [5406, 11661] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII GIIM Feature: gene Location: 5406-5639 bp Ori: OKT81023.1 Feature: domain Description: DUF905 Location: 5436-5634 bp Feature: domain Description: DUF905 Location: 5436-5634 bp Feature: gene Location: 5696-6181 bp Ori: OKT81024.1 Feature: domain Description: PRK13732 Location: 5699-6179 bp Feature: domain Description: PRK1 3732 Location: 5699-61 79 bp Feature: gene Location: 6331-8232 bp Ori: OKT81025.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6598-7429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6598-7429 bp Feature: domain Description: Intron_maturas2 Location: 7543-7801 bp Feature: domain Description: Intron_maturas2 Location: 7543-7801 bp Feature: domain Description: HNHc Note: nucleases Location: 7975-8137 bp Feature: domain Description: HNHc Note: nucleases Location: 7975-81 37 bp Feature: gene Location: 8910-9038 bp Feature: gene Location: 8949-9177 bp Feature: gene Location: 9112-9306 bp Feature: gene Location: 9357-9545 bp Feature: gene Location: 10088-11661 bp Ori: OKT81027.1 Feature: domain Description: RVT_N Location: 10136-10373 bp Feature: domain Description: RVT_N Location: 1 01 36-1 0373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10424-11066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0424-1 1 066 bp Feature: domain Description: GIIM Note: maturase Location: 11117-11351 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 1 7-1 1 351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RVT_N (pfam13655), GIIM (pfam08388)

Seq: LGMS01000135.1 Escherichia coli strain 100664 ctg7180000013481, whole genome shotgun sequence (165697 bp)
Overview 1 RT 1: 112375-116569 bp 2 RT 2: 131993-136963 bp Neighborhood of RT #1 [112375, 116569] PRK10947 RVT-AbiP2 RepL Neighborhood of RT #2 [131993, 136963] HTH_XRE RVT-Retrons PRK13889 Feature: gene Location: 112375-112725 bp Feature: gene Location: 112795-113055 bp Ori: OKT88644.1 Feature: domain Description: PRK10947 Location: 112810-113032 bp Feature: domain Description: PRK10947 Location: 112 810-113032 bp Feature: gene Location: 113252-114796 bp Ori: OKT88645.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 113681-114140 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 113681-114140 bp Feature: gene Location: 115152-115697 bp Ori: OKT88646.1 Feature: domain Description: RepL Location: 115275-115647 bp Feature: domain Description: RepL Location: 1152 75-115647 bp Feature: gene Location: 116348-116569 bp Feature: gene Location: 131993-132208 bp Feature: gene Location: 132299-132580 bp Ori: OKT88661.1 Feature: domain Description: HTH_XRE Location: 132314-132479 bp Feature: domain Description: HTH_XRE Location: 132 314-132 479 bp Feature: gene Location: 132573-133673 bp Ori: OKT88662.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132714-133266 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132 714-1332 66 bp Feature: gene Location: 133750-135252 bp Ori: OKT88663.1 Feature: domain Description: PRK13889 Location: 133756-134335 bp Feature: domain Description: PRK13889 Location: 133756-134335 bp Feature: gene Location: 136094-136963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10947 (DNA-binding transcriptional regulator H-NS), RVT-AbiP2, RepL (pfam05732), HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional)

Seq: LGMS01000186.1 Escherichia coli strain 100664 ctg7180000013532, whole genome shotgun sequence (13889 bp)
Overview 1 RT 1: 9226-13889 bp Neighborhood of RT #1 [9226, 13889] MFS_TetA PRK13756 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 9226-10431 bp Ori: OKT81350.1 Feature: domain Description: MFS_TetA Location: 9244-10381 bp Feature: domain Description: MFS_TetA Location: 9244-103 81 bp Feature: gene Location: 10513-11136 bp Ori: OKT81351.1 Feature: domain Description: PRK13756 Location: 10516-11128 bp Feature: domain Description: PRK13 756 Location: 10516-11128 bp Feature: gene Location: 11295-12971 bp Ori: OKT81352.1 Feature: domain Description: RVT_N Location: 11352-11589 bp Feature: domain Description: RVT_N Location: 113 52-11589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11640-12282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11640-12282 bp Feature: domain Description: GIIM Note: maturase Location: 12333-12567 bp Feature: domain Description: GIIM Note: maturase Location: 123 3 3 -12567 bp Feature: domain Description: HNHc Note: nucleases Location: 12777-12936 bp Feature: domain Description: HNHc Note: nucleases Location: 12777-1293 6 bp Feature: gene Location: 13505-13693 bp Feature: gene Location: 13686-13889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_TetA (cd17388), PRK13756 (TetR family transcriptional regulator), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LGMS01000065.1 Escherichia coli strain 100664 ctg7180000013411, whole genome shotgun sequence (4142 bp)
Overview 1 RT 1: 1-3289 bp Neighborhood of RT #1 [1, 3289] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-204 bp Feature: gene Location: 197-385 bp Feature: gene Location: 919-2595 bp Ori: OKT92887.1 Feature: domain Description: RVT_N Location: 976-1213 bp Feature: domain Description: RVT_N Location: 976-1213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1264-1906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1264 -1906 bp Feature: domain Description: GIIM Note: maturase Location: 1957-2191 bp Feature: domain Description: GIIM Note: maturase Location: 1957-2191 bp Feature: domain Description: HNHc Note: nucleases Location: 2401-2560 bp Feature: domain Description: HNHc Note: nucleases Location: 24 01-2560 bp Feature: gene Location: 2710-2948 bp Feature: gene Location: 3047-3289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)