myRT

myRT report for GCA_001912115.1_ASM191211v1

Download annotations/find similar RTs

Seq: LGNC01000089.1 Escherichia coli strain 703200 ctg7180000002767, whole genome shotgun sequence (218381 bp)
Overview 1 RT 1: 209307-212400 bp Neighborhood of RT #1 [209307, 212400] COG2085 PHA02517 RVT-GII GIIM Feature: gene Location: 209307-209720 bp Ori: OKU60858.1 Feature: domain Description: COG2085 Location: 209406-209553 bp Feature: domain Description: COG2085 Location: 209406-209553 bp Feature: gene Location: 209647-210140 bp Feature: domain Description: PHA02517 Location: 209656-209827 bp Feature: domain Description: PHA0251 7 Location: 209656-209827 bp Feature: gene Location: 210215-211738 bp Ori: OKU60859.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210488-211220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 0488-21 1 220 bp Feature: domain Description: GIIM Note: maturase Location: 211295-211493 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 295-21 1 493 bp Feature: gene Location: 211692-212117 bp Feature: gene Location: 212152-212400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LGNC01000076.1 Escherichia coli strain 703200 ctg7180000002753, whole genome shotgun sequence (61296 bp)
Overview 1 RT 1: 6607-10801 bp 2 RT 2: 26225-31195 bp Neighborhood of RT #1 [6607, 10801] PRK10947 RVT-AbiP2 RepL Neighborhood of RT #2 [26225, 31195] HTH_XRE RVT-Retrons PRK13889 Feature: gene Location: 6607-6957 bp Feature: gene Location: 7027-7287 bp Ori: OKU63288.1 Feature: domain Description: PRK10947 Location: 7042-7264 bp Feature: domain Description: PRK10947 Location: 7042 -72 64 bp Feature: gene Location: 7484-9028 bp Ori: OKU63289.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 7913-8372 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 7913-8372 bp Feature: gene Location: 9384-9929 bp Ori: OKU63290.1 Feature: domain Description: RepL Location: 9507-9879 bp Feature: domain Description: RepL Location: 9507-9879 bp Feature: gene Location: 10580-10801 bp Feature: gene Location: 26225-26440 bp Feature: gene Location: 26531-26812 bp Ori: OKU63305.1 Feature: domain Description: HTH_XRE Location: 26546-26711 bp Feature: domain Description: HTH_XRE Location: 2 6546-2 6711 bp Feature: gene Location: 26805-27905 bp Ori: OKU63306.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26946-27498 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 6946-2 7498 bp Feature: gene Location: 27982-29484 bp Ori: OKU63307.1 Feature: domain Description: PRK13889 Location: 27988-28564 bp Feature: domain Description: PRK13889 Location: 2 7988-2 8564 bp Feature: gene Location: 30326-31195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10947 (DNA-binding transcriptional regulator H-NS), RVT-AbiP2, RepL (pfam05732), HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional)