myRT

myRT report for GCA_001912185.1_ASM191218v1

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Seq: LRKB01000129.1 Escherichia coli strain 202733 NODE_69_length_2272_cov_77.0767_ID_137, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2272 bp Neighborhood of RT #1 [93, 2272] RVT-GII GIIM Feature: gene Location: 93-1616 bp Ori: OKU91855.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1570-1995 bp Feature: gene Location: 2030-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LRKB01000119.1 Escherichia coli strain 202733 NODE_5_length_258518_cov_22.5762_ID_9, whole genome shotgun sequence (258518 bp)
Overview 1 RT 1: 1604-6203 bp Neighborhood of RT #1 [1604, 6205] Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 1604-1732 bp Ori: OKU93121.1 Feature: domain Description: Caudo_TAP Location: 1607-1721 bp Feature: domain Description: Caudo_TAP Location: 1607-172 1 bp Feature: gene Location: 1719-1891 bp Feature: gene Location: 2177-3781 bp Ori: OKU92890.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2468-3059 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 468-3059 bp Feature: domain Description: TIR_2 Location: 3386-3674 bp Feature: domain Description: TIR_2 Location: 3386-3674 bp Feature: gene Location: 4139-4399 bp Ori: OKU92891.1 Feature: domain Description: PRK10597 Location: 4142-4382 bp Feature: domain Description: PRK10597 Location: 4142 -4382 bp Feature: gene Location: 4619-6205 bp Ori: OKU92892.1 Feature: domain Description: prfC Location: 4637-6203 bp Feature: domain Description: prfC Location: 4637-62 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: LRKB01000075.1 Escherichia coli strain 202733 NODE_19_length_81285_cov_26.2917_ID_37, whole genome shotgun sequence (81285 bp)
Overview 1 RT 1: 53691-57573 bp Neighborhood of RT #1 [53691, 57578] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 53691-54149 bp Ori: OKV00235.1 Feature: domain Description: dut Location: 53697-54144 bp Feature: domain Description: dut Location: 53 697-54144 bp Feature: gene Location: 54256-54852 bp Ori: OKV00236.1 Feature: domain Description: slmA Location: 54262-54838 bp Feature: domain Description: slmA Location: 54262-5483 8 bp Feature: gene Location: 54898-55857 bp Ori: OKV00237.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55033-55582 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5503 3 -55582 bp Feature: gene Location: 56155-56796 bp Ori: OKV00238.1 Feature: domain Description: pyrE Location: 56158-56791 bp Feature: domain Description: pyrE Location: 56158-56791 bp Feature: gene Location: 56862-57578 bp Ori: OKV00239.1 Feature: domain Description: rph Location: 56865-57573 bp Feature: domain Description: rph Location: 56865-57573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)