myRT

myRT report for GCA_001912545.1_ASM191254v1

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Seq: LRKD01000179.1 Escherichia coli strain 700328 ctg7180000029841, whole genome shotgun sequence (43969 bp)
Overview 1 RT 1: 805-4929 bp Neighborhood of RT #1 [805, 5003] GDP_FS_SDR_e PRK15434 RVT-GII IS285 YhhI YhhI Feature: gene Location: 805-1770 bp Ori: OKU76611.1 Feature: domain Description: GDP_FS_SDR_e Location: 820-1744 bp Feature: domain Description: GDP_FS_SDR_e Location: 820-1 744 bp Feature: gene Location: 1773-2246 bp Ori: OKU76612.1 Feature: domain Description: PRK15434 Location: 1776-2226 bp Feature: domain Description: PRK1 5434 Location: 1 776-2226 bp Feature: gene Location: 3017-3241 bp Ori: OKU76647.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3119-3227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 9-3227 bp Feature: gene Location: 3290-4048 bp Ori: OKU76613.1 Feature: domain Description: IS285 Location: 3320-4010 bp Feature: domain Description: IS285 Location: 3320-401 0 bp Feature: gene Location: 4245-5003 bp Ori: OKU76648.1 Feature: domain Description: YhhI Location: 4251-4515 bp Feature: domain Description: YhhI Location: 4251 -451 5 bp Feature: domain Description: YhhI Location: 4575-4929 bp Feature: domain Description: YhhI Location: 4575-4929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), PRK15434 (GDP-mannose mannosyl hydrolase), RVT-GII, IS285 (COG3328), YhhI (COG5433)

Seq: LRKD01000198.1 Escherichia coli strain 700328 ctg7180000029860, whole genome shotgun sequence (7047 bp)
Overview 1 RT 1: 1770-4880 bp Neighborhood of RT #1 [1770, 4880] DDE_Tnp_IS66_C RVT-GII GIIM Feature: gene Location: 1770-1973 bp Feature: gene Location: 2397-2528 bp Ori: OKU74568.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 2400-2505 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 400-2 505 bp Feature: gene Location: 2644-3804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2761-3412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 761-3412 bp Feature: domain Description: GIIM Note: maturase Location: 3490-3715 bp Feature: domain Description: GIIM Note: maturase Location: 3490-3715 bp Feature: gene Location: 3848-4267 bp Feature: gene Location: 4583-4880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: LRKD01000146.1 Escherichia coli strain 700328 ctg7180000029806, whole genome shotgun sequence (26317 bp)
Overview 1 RT 1: 17422-20515 bp Neighborhood of RT #1 [17422, 20515] COG2085 PHA02517 RVT-GII GIIM Feature: gene Location: 17422-17835 bp Ori: OKU79554.1 Feature: domain Description: COG2085 Location: 17521-17668 bp Feature: domain Description: COG2085 Location: 17521-17668 bp Feature: gene Location: 17762-18255 bp Feature: domain Description: PHA02517 Location: 17771-17942 bp Feature: domain Description: PHA02517 Location: 17771-17942 bp Feature: gene Location: 18330-19853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18603-19335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18603 -193 3 5 bp Feature: domain Description: GIIM Note: maturase Location: 19410-19608 bp Feature: domain Description: GIIM Note: maturase Location: 19410-19608 bp Feature: gene Location: 19807-20232 bp Feature: gene Location: 20267-20515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LRKD01000167.1 Escherichia coli strain 700328 ctg7180000029827, whole genome shotgun sequence (133308 bp)
Overview 1 RT 1: 93280-97162 bp Neighborhood of RT #1 [93280, 97167] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 93280-93996 bp Ori: OKU78903.1 Feature: domain Description: rph Location: 93283-93991 bp Feature: domain Description: rph Location: 93283-93991 bp Feature: gene Location: 94062-94703 bp Ori: OKU78904.1 Feature: domain Description: pyrE Location: 94065-94698 bp Feature: domain Description: pyrE Location: 94 065-94 698 bp Feature: gene Location: 95001-95960 bp Ori: OKU78905.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95136-95685 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95136-95685 bp Feature: gene Location: 96006-96602 bp Ori: OKU78906.1 Feature: domain Description: slmA Location: 96012-96588 bp Feature: domain Description: slmA Location: 96012-96588 bp Feature: gene Location: 96709-97167 bp Ori: OKU78907.1 Feature: domain Description: dut Location: 96715-97162 bp Feature: domain Description: dut Location: 96715-97162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)