myRT

myRT report for GCA_001912555.1_ASM191255v1

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Seq: LRKA01000233.1 Escherichia coli strain 202545 NODE_81_length_5926_cov_35.9355_ID_161, whole genome shotgun sequence (5926 bp)
Overview 1 RT 1: 1397-3857 bp Neighborhood of RT #1 [1397, 3880] RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 1397-1694 bp Feature: gene Location: 2010-2429 bp Feature: gene Location: 2473-3270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2590-3241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2590-3241 bp Feature: gene Location: 3292-3633 bp Ori: OKU66210.1 Feature: domain Description: GIIM Note: maturase Location: 3319-3544 bp Feature: domain Description: GIIM Note: maturase Location: 331 9-3544 bp Feature: gene Location: 3749-3880 bp Ori: OKU66211.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 3752-3857 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3752-3857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817)

Seq: LRKA01000033.1 Escherichia coli strain 202545 NODE_12_length_115348_cov_41.0994_ID_23, whole genome shotgun sequence (115348 bp)
Overview 1 RT 1: 62170-66052 bp Neighborhood of RT #1 [62170, 66057] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 62170-62886 bp Ori: OKU80294.1 Feature: domain Description: rph Location: 62173-62881 bp Feature: domain Description: rph Location: 62 173-62 881 bp Feature: gene Location: 62952-63593 bp Ori: OKU80295.1 Feature: domain Description: pyrE Location: 62955-63588 bp Feature: domain Description: pyrE Location: 62 955-63588 bp Feature: gene Location: 63891-64850 bp Ori: OKU80296.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 64026-64575 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6402 6-64575 bp Feature: gene Location: 64896-65492 bp Ori: OKU80297.1 Feature: domain Description: slmA Location: 64902-65478 bp Feature: domain Description: slmA Location: 64902 -65478 bp Feature: gene Location: 65599-66057 bp Ori: OKU80298.1 Feature: domain Description: dut Location: 65605-66052 bp Feature: domain Description: dut Location: 65605-66052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: LRKA01000010.1 Escherichia coli strain 202545 NODE_109_length_2351_cov_34.7502_ID_217, whole genome shotgun sequence (2351 bp)
Overview 1 RT 1: 1-2331 bp Neighborhood of RT #1 [1, 2351] DDE_Tnp_1_assoc IS285 RVT-GII PRK15434 Feature: gene Location: 1-227 bp Ori: OKU80863.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 22-226 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 22-226 bp Feature: gene Location: 331-1089 bp Ori: OKU80864.1 Feature: domain Description: IS285 Location: 361-1051 bp Feature: domain Description: IS285 Location: 3 61-1051 bp Feature: gene Location: 1138-1362 bp Ori: OKU80866.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1240-1348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1240-13 48 bp Feature: gene Location: 2133-2351 bp Ori: OKU80865.1 Feature: domain Description: PRK15434 Location: 2136-2331 bp Feature: domain Description: PRK1543 4 Location: 213 6-23 3 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase)