myRT

myRT report for GCA_001913835.1_ASM191383v1

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Seq: MJBN01000012.1 Gardnerella vaginalis strain ATCC 49145 BHS10_contig000012, whole genome shotgun sequence (12423 bp)
Overview 1 RT 1: 643-5348 bp Neighborhood of RT #1 [643, 5407] ParE_toxin COG2865 RVT-UG15 COG1373 Nudix_Hydrolase_29 Feature: gene Location: 643-966 bp Ori: OKY55101.1 Feature: domain Description: ParE_toxin Location: 661-928 bp Feature: domain Description: ParE_toxin Location: 661 -928 bp Feature: gene Location: 1437-2852 bp Ori: OKY55102.1 Feature: domain Description: COG2865 Location: 1440-2847 bp Feature: domain Description: COG2865 Location: 1 440-2847 bp Feature: gene Location: 2886-4391 bp Ori: OKY55103.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 3315-3714 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 331 5-371 4 bp Feature: gene Location: 4664-4918 bp Ori: OKY55104.1 Feature: domain Description: COG1373 Location: 4691-4910 bp Feature: domain Description: COG1 373 Location: 4691 -491 0 bp Feature: gene Location: 4922-5407 bp Ori: OKY55105.1 Feature: domain Description: Nudix_Hydrolase_29 Location: 4967-5348 bp Feature: domain Description: Nudix_Hydrolase_29 Location: 4967-5348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE_toxin (pfam05016), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-UG15, COG1373 (Predicted ATPase, AAA+ superfamily ), Nudix_Hydrolase_29 (cd04688)

Seq: MJBN01000003.1 Gardnerella vaginalis strain ATCC 49145 BHS10_contig000003, whole genome shotgun sequence (532555 bp)
Overview 1 RT 1: 286541-291245 bp Neighborhood of RT #1 [286541, 291394] RVT-DGRs GH25_LysA-like Phage_holin_4_1 Feature: gene Location: 286541-287572 bp Feature: gene Location: 287651-288067 bp Feature: gene Location: 288459-289580 bp Ori: OKY55757.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 288732-289332 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 88732 -2 89332 bp Feature: gene Location: 289900-290898 bp Ori: OKY55758.1 Gene: lyc_1 Feature: domain Description: GH25_LysA-like Location: 289909-290488 bp Feature: domain Description: GH2 5_LysA-like Location: 2 89909-2 90488 bp Feature: gene Location: 290918-291394 bp Ori: OKY55759.1 Feature: domain Description: Phage_holin_4_1 Location: 290960-291245 bp Feature: domain Description: Phage_holin_4_1 Location: 2 90960-2 912 45 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, GH25_LysA-like (cd06417), Phage_holin_4_1 (pfam05105)