myRT

myRT report for GCA_001913895.1_ASM191389v1

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Seq: MKXP01000012.1 Bacteroides vulgatus isolate 0118A_42_520 qb307082014_I_scaffold_10, whole genome shotgun sequence (240660 bp)
Overview 1 RT 1: 161037-164872 bp Neighborhood of RT #1 [161037, 164872] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 161037-161507 bp Feature: domain Description: Phage_holin_4_1 Location: 161124-161436 bp Feature: domain Description: Phage_holin_4_1 Location: 1 61 1 24-1 61 436 bp Feature: gene Location: 161509-161880 bp Feature: gene Location: 161858-162892 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 162068-162680 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 62068-1 62680 bp Feature: gene Location: 163150-163494 bp Feature: gene Location: 163538-164872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: MKXP01000068.1 Bacteroides vulgatus isolate 0118A_42_520 qb307082014_I_scaffold_14, whole genome shotgun sequence (184437 bp)
Overview 1 RT 1: 120449-128860 bp Neighborhood of RT #1 [120449, 130656] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 120449-121594 bp Feature: domain Description: Arm-DNA-bind_5 Location: 120473-120719 bp Feature: domain Description: Arm-DNA-bind_5 Location: 12 0473-12 0719 bp Feature: domain Description: Phage_int_SAM_5 Location: 120758-121043 bp Feature: domain Description: Phage_int_SAM_5 Location: 12 0758-12 1043 bp Feature: domain Description: INTN1_C_like Location: 121082-121556 bp Feature: domain Description: INTN1_C_like Location: 12 1082 -12 1556 bp Feature: gene Location: 121644-122138 bp Feature: gene Location: 122140-123495 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 122416-123007 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12 2 416-12 3007 bp Feature: gene Location: 123640-123807 bp Feature: gene Location: 123868-130656 bp Feature: domain Description: Laminin_G_3 Location: 126304-126685 bp Feature: domain Description: Laminin_G_3 Location: 12 6304-12 6685 bp Feature: domain Description: pfam08757 Location: 127480-127804 bp Feature: domain Description: pfam08757 Location: 12 7480-12 7804 bp Feature: domain Description: LRR_AMN1 Location: 128416-128860 bp Feature: domain Description: LRR_AMN1 Location: 12 8416-12 8860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)

Seq: MKXP01000017.1 Bacteroides vulgatus isolate 0118A_42_520 qb307082014_I_scaffold_23, whole genome shotgun sequence (192183 bp)
Overview 1 RT 1: 102517-106027 bp Neighborhood of RT #1 [102517, 106692] RVT-DGRs Phage_Mu_F Feature: gene Location: 102517-102759 bp Feature: gene Location: 102958-103443 bp Feature: gene Location: 103443-104744 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 103656-104250 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 103 656-104250 bp Feature: gene Location: 105123-105356 bp Feature: gene Location: 105466-106692 bp Feature: domain Description: Phage_Mu_F Location: 105751-106027 bp Feature: domain Description: Phage_Mu_F Location: 105751-106027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_Mu_F (pfam04233)

Seq: MKXP01000042.1 Bacteroides vulgatus isolate 0118A_42_520 qb307082014_I_scaffold_26, whole genome shotgun sequence (124196 bp)
Overview 1 RT 1: 85578-89611 bp Neighborhood of RT #1 [85578, 89631] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Feature: gene Location: 85578-86153 bp Feature: domain Description: TraO Location: 85653-86148 bp Feature: domain Description: TraO Location: 85653-8614 8 bp Feature: gene Location: 86156-86863 bp Feature: domain Description: Bac_Flav_CT_N Location: 86282-86840 bp Feature: domain Description: Bac_Flav_CT_N Location: 86282-8684 0 bp Feature: gene Location: 86853-88664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87117-87939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87117-87939 bp Feature: domain Description: Intron_maturas2 Location: 88011-88320 bp Feature: domain Description: Intron_maturas2 Location: 88011-88320 bp Feature: gene Location: 88699-89187 bp Feature: gene Location: 89206-89631 bp Feature: domain Description: Bac_Flav_CT_N Location: 89209-89611 bp Feature: domain Description: Bac_Flav_CT_N Location: 89209-89611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348)

Seq: MKXP01000043.1 Bacteroides vulgatus isolate 0118A_42_520 qb307082014_I_scaffold_50, whole genome shotgun sequence (102128 bp)
Overview 1 RT 1: 72189-76179 bp Neighborhood of RT #1 [72189, 77159] TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY Feature: gene Location: 72189-72557 bp Feature: gene Location: 72663-73688 bp Feature: domain Description: TraG-D_C Location: 73038-73374 bp Feature: domain Description: TraG-D_C Location: 73038-73374 bp Feature: gene Location: 73652-75469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73919-74741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73919-74741 bp Feature: domain Description: Intron_maturas2 Location: 74885-75119 bp Feature: domain Description: Intron_maturas2 Location: 74885 -75 119 bp Feature: domain Description: HNHc Note: nucleases Location: 75290-75440 bp Feature: domain Description: HNHc Note: nucleases Location: 75 290-75 440 bp Feature: gene Location: 75636-75920 bp Feature: gene Location: 75996-77159 bp Feature: domain Description: YWFCY Location: 76002-76179 bp Feature: domain Description: YWFCY Location: 76002-76179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293)

Seq: MKXP01000110.1 Bacteroides vulgatus isolate 0118A_42_520 qb307082014_I_scaffold_51, whole genome shotgun sequence (70328 bp)
Overview 1 RT 1: 33650-37446 bp Neighborhood of RT #1 [33650, 37446] RVT-DGRs RVT-DGRs Feature: gene Location: 33650-34045 bp Feature: gene Location: 34067-34651 bp Feature: gene Location: 34599-34913 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34614-34836 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 346 14-34836 bp Feature: gene Location: 34795-35610 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35128-35455 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35128-35455 bp Feature: gene Location: 35894-36097 bp Feature: gene Location: 36127-37446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs