myRT

myRT report for GCA_001915345.1_ASM191534v1

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Seq: MNQI01000053.1 Bacteroidales bacterium 43_36 Ley3_66761_scaffold_2186, whole genome shotgun sequence (25032 bp)
Overview 1 RT 1: 96-5331 bp Neighborhood of RT #1 [96, 5331] YotD RVT-GII GIIM Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 96-488 bp Feature: gene Location: 743-1336 bp Feature: domain Description: YotD Location: 779-1313 bp Feature: domain Description: YotD Location: 779-1 31 3 bp Feature: gene Location: 1998-3413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2343-2958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2343-2958 bp Feature: domain Description: GIIM Note: maturase Location: 3018-3237 bp Feature: domain Description: GIIM Note: maturase Location: 301 8-3237 bp Feature: gene Location: 3716-5044 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3752-4028 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3752-4028 bp Feature: domain Description: Phage_int_SAM_5 Location: 4253-4463 bp Feature: domain Description: Phage_int_SAM_5 Location: 4253-4463 bp Feature: domain Description: INTN1_C_like Location: 4523-5000 bp Feature: domain Description: INTN1 _C_like Location: 4523-5000 bp Feature: gene Location: 5065-5331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), YotD (COG1592)

Seq: MNQI01000006.1 Bacteroidales bacterium 43_36 Ley3_66761_scaffold_67, whole genome shotgun sequence (228988 bp)
Overview 1 RT 1: 215979-224102 bp Neighborhood of RT #1 [215979, 224116] RVT-Retrons HTH_17 COG4951 SSL2 PLDc_C_DEXD_like Feature: gene Location: 215979-216617 bp Feature: gene Location: 216617-217723 bp Feature: gene Location: 217720-219693 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 217903-218491 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 17903-2 18491 bp Feature: gene Location: 220004-220315 bp Feature: domain Description: HTH_17 Location: 220160-220298 bp Feature: domain Description: HTH_17 Location: 2 2 0160-2 2 02 98 bp Feature: gene Location: 221300-224116 bp Feature: domain Description: COG4951 Location: 221312-222437 bp Feature: domain Description: COG4951 Location: 2 2 1312 -2 2 2 437 bp Feature: domain Description: SSL2 Location: 222488-223736 bp Feature: domain Description: SSL2 Location: 2 2 2 488-2 2 3736 bp Feature: domain Description: PLDc_C_DEXD_like Location: 223739-224102 bp Feature: domain Description: PLDc_C_DEXD_like Location: 2 2 3739-2 2 4102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_17 (pfam12728), COG4951 (Uncharacterized protein ), SSL2 (COG1061), PLDc_C_DEXD_like (cd09126)

Seq: MNQI01000046.1 Bacteroidales bacterium 43_36 Ley3_66761_scaffold_804, whole genome shotgun sequence (50236 bp)
Overview 1 RT 1: 354-4776 bp Neighborhood of RT #1 [354, 4883] RVT-GII Intron_maturas2 Mob_Pre KOG0996 DDE_Tnp_1_3 Feature: gene Location: 354-2162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 618-1440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 618-1440 bp Feature: domain Description: Intron_maturas2 Location: 1551-1821 bp Feature: domain Description: Intron_maturas2 Location: 1551-1821 bp Feature: gene Location: 2280-3731 bp Feature: domain Description: Mob_Pre Location: 2682-2988 bp Feature: domain Description: Mob_Pre Location: 2682-2988 bp Feature: domain Description: KOG0996 Location: 3006-3447 bp Feature: domain Description: KOG0996 Location: 3 006-3 447 bp Feature: gene Location: 3984-4883 bp Feature: domain Description: DDE_Tnp_1_3 Location: 4311-4776 bp Feature: domain Description: DDE_Tnp_1_3 Location: 43 11-4776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mob_Pre (pfam01076), KOG0996 (KOG0996, Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) ), RVT-GII, Intron_maturas2 (pfam01348), DDE_Tnp_1_3 (pfam13612)