myRT

myRT report for GCA_001915545.1_ASM191554v1

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Seq: MNQS01000138.1 Bacteroides sp. 43_108 Ley3_66761_scaffold_3817, whole genome shotgun sequence (11237 bp)
Overview 1 RT 1: 6314-10597 bp Neighborhood of RT #1 [6314, 10626] TMAO_torS MutS_I RVT-DGRs DUF1566 Feature: gene Location: 6314-8605 bp Ori: OKZ16651.1 Feature: domain Description: TMAO_torS Location: 7175-8264 bp Feature: domain Description: TMAO_torS Location: 71 75-8264 bp Feature: gene Location: 8667-9143 bp Ori: OKZ16646.1 Feature: domain Description: MutS_I Location: 8718-8913 bp Feature: domain Description: MutS_I Location: 871 8-891 3 bp Feature: gene Location: 9140-10180 bp Ori: OKZ16647.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9146-9836 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 91 46-9836 bp Feature: gene Location: 10177-10401 bp Feature: gene Location: 10420-10626 bp Ori: OKZ16649.1 Feature: domain Description: DUF1566 Location: 10462-10597 bp Feature: domain Description: DUF1 566 Location: 1 0462-1 0597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TMAO_torS (TIGR02956), MutS_I (pfam01624), RVT-DGRs, DUF1566 (pfam07603)

Seq: MNQS01000018.1 Bacteroides sp. 43_108 Ley3_66761_scaffold_1053, whole genome shotgun sequence (42813 bp)
Overview 1 RT 1: 1881-15386 bp Neighborhood of RT #1 [1881, 15386] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 1881-2123 bp Feature: gene Location: 2303-2788 bp Feature: gene Location: 2785-4089 bp Ori: OKZ24502.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2998-3592 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 998-3592 bp Feature: gene Location: 4606-11343 bp Ori: OKZ24503.1 Feature: domain Description: Laminin_G_3 Location: 6067-6145 bp Feature: domain Description: Laminin_G_3 Location: 6067-6145 bp Feature: domain Description: Laminin_G_3 Location: 6796-7222 bp Feature: domain Description: Laminin_G_3 Location: 6796-72 2 2 bp Feature: gene Location: 11370-15386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: MNQS01000038.1 Bacteroides sp. 43_108 Ley3_66761_scaffold_8378, whole genome shotgun sequence (5518 bp)
Overview 1 RT 1: 26-5518 bp Neighborhood of RT #1 [26, 5518] HTH_17 HTH_17 HTH_17 HTH_17 Phage_int_SAM_5 INTN1_C_like RVT-Retrons Feature: gene Location: 26-922 bp Ori: OKZ22827.1 Feature: domain Description: HTH_17 Location: 221-356 bp Feature: domain Description: HTH_17 Location: 221-3 56 bp Feature: domain Description: HTH_17 Location: 422-569 bp Feature: domain Description: HTH_17 Location: 422-569 bp Feature: domain Description: HTH_17 Location: 596-725 bp Feature: domain Description: HTH_17 Location: 596-725 bp Feature: domain Description: HTH_17 Location: 764-905 bp Feature: domain Description: HTH_17 Location: 764-905 bp Feature: gene Location: 1143-1916 bp Ori: OKZ22824.1 Feature: domain Description: Phage_int_SAM_5 Location: 1230-1500 bp Feature: domain Description: Phage_int_SAM_5 Location: 123 0-1500 bp Feature: domain Description: INTN1_C_like Location: 1557-1911 bp Feature: domain Description: INTN1_C_like Location: 1557-1911 bp Feature: gene Location: 2157-3200 bp Ori: OKZ22825.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2379-2958 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23 79-2958 bp Feature: gene Location: 3341-4639 bp Feature: gene Location: 4922-5518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons

Seq: MNQS01000127.1 Bacteroides sp. 43_108 Ley3_66761_scaffold_1258, whole genome shotgun sequence (40677 bp)
Overview 1 RT 1: 22950-30074 bp Neighborhood of RT #1 [22950, 30074] DUF4120 RVT-UG2 RVT-UG2 DUF2075 Feature: gene Location: 22950-23240 bp Ori: OKZ18573.1 Feature: domain Description: DUF4120 Location: 22956-23238 bp Feature: domain Description: DUF4 120 Location: 22956-23238 bp Feature: gene Location: 23374-23628 bp Feature: gene Location: 24307-24900 bp Ori: OKZ18575.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24622-24889 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24 622-24 889 bp Feature: gene Location: 24923-25972 bp Ori: OKZ18576.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24938-25583 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24 938-25583 bp Feature: gene Location: 26095-28176 bp Ori: OKZ18577.1 Feature: domain Description: DUF2075 Location: 26815-28078 bp Feature: domain Description: DUF2075 Location: 26815-28078 bp Feature: gene Location: 28206-30074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4120 (pfam13496), RVT-UG2, DUF2075 (pfam09848)

Seq: MNQS01000012.1 Bacteroides sp. 43_108 Ley3_66761_scaffold_901, whole genome shotgun sequence (48532 bp)
Overview 1 RT 1: 730-3659 bp Neighborhood of RT #1 [730, 3659] RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 730-2376 bp Ori: OKZ24931.1 Feature: domain Description: RVT_N Location: 784-1027 bp Feature: domain Description: RVT_N Location: 784-1027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1072-1717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1072-1717 bp Feature: domain Description: GIIM Note: maturase Location: 1771-2002 bp Feature: domain Description: GIIM Note: maturase Location: 1771-2002 bp Feature: gene Location: 2385-3021 bp Feature: domain Description: Bac_Flav_CT_G Location: 2502-2601 bp Feature: domain Description: Bac_Flav_CT_G Location: 25 02-2601 bp Feature: gene Location: 3021-3659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783)

Seq: MNQS01000184.1 Bacteroides sp. 43_108 Ley3_66761_scaffold_2209, whole genome shotgun sequence (21388 bp)
Overview 1 RT 1: 1966-6711 bp Neighborhood of RT #1 [1966, 6770] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-Retrons HTH_17 HTH_17 Feature: gene Location: 1966-3159 bp Ori: OKZ13240.1 Feature: domain Description: Arm-DNA-bind_5 Location: 1996-2239 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1996 -2239 bp Feature: domain Description: Phage_int_SAM_5 Location: 2311-2578 bp Feature: domain Description: Phage_int_SAM_5 Location: 2311-2578 bp Feature: domain Description: INTN1_C_like Location: 2635-3109 bp Feature: domain Description: INTN1_C_like Location: 26 35-3109 bp Feature: gene Location: 3268-4479 bp Feature: gene Location: 4643-5734 bp Ori: OKZ13242.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4856-5486 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4856 -5486 bp Feature: gene Location: 6109-6417 bp Ori: OKZ13243.1 Feature: domain Description: HTH_17 Location: 6238-6385 bp Feature: domain Description: HTH_17 Location: 6 238-6 385 bp Feature: gene Location: 6459-6770 bp Ori: OKZ13253.1 Feature: domain Description: HTH_17 Location: 6579-6711 bp Feature: domain Description: HTH_17 Location: 6 579-6 711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, HTH_17 (pfam12728)