myRT

myRT report for GCA_001915595.1_ASM191559v1

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Seq: MNQU01000234.1 Bacteroides uniformis isolate 45_41 Ley3_66761_scaffold_385, whole genome shotgun sequence (79271 bp)
Overview 1 RT 1: 61434-66692 bp Neighborhood of RT #1 [61434, 66721] def secD RVT-Retrons Tag MFS_DtpA_like Feature: gene Location: 61434-61994 bp Feature: domain Description: def Location: 61437-61968 bp Feature: domain Description: def Location: 61 437-61 968 bp Feature: gene Location: 62230-63054 bp Feature: domain Description: secD Location: 62362-62656 bp Feature: domain Description: secD Location: 62362-62656 bp Feature: gene Location: 63051-64172 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63363-63915 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63363-6391 5 bp Feature: gene Location: 64483-65055 bp Feature: domain Description: Tag Location: 64504-65050 bp Feature: domain Description: Tag Location: 64504-65050 bp Feature: gene Location: 65183-66721 bp Feature: domain Description: MFS_DtpA_like Location: 65204-66692 bp Feature: domain Description: MFS_DtpA_like Location: 65204-66692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT def (PRK00150), secD (TIGR01129), RVT-Retrons, Tag (COG2818), MFS_DtpA_like (cd17346)

Seq: MNQU01000254.1 Bacteroides uniformis isolate 45_41 Ley3_66761_scaffold_3470, whole genome shotgun sequence (12650 bp)
Overview 1 RT 1: 7998-11530 bp Neighborhood of RT #1 [7998, 11530] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 7998-8807 bp Feature: domain Description: DUF1566 Location: 8529-8778 bp Feature: domain Description: DUF1566 Location: 852 9-8778 bp Feature: gene Location: 8954-9361 bp Feature: domain Description: Avd_like Location: 8987-9296 bp Feature: domain Description: Avd_like Location: 8987-92 96 bp Feature: gene Location: 9376-10797 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9751-10453 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9751-10453 bp Feature: gene Location: 10760-11038 bp Feature: gene Location: 11243-11530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: MNQU01000237.1 Bacteroides uniformis isolate 45_41 Ley3_66761_scaffold_972, whole genome shotgun sequence (45970 bp)
Overview 1 RT 1: 167-8595 bp Neighborhood of RT #1 [167, 10376] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 CotH LRR_AMN1 Feature: gene Location: 167-1312 bp Feature: domain Description: Arm-DNA-bind_5 Location: 191-437 bp Feature: domain Description: Arm-DNA-bind_5 Location: 191-43 7 bp Feature: domain Description: Phage_int_SAM_5 Location: 476-761 bp Feature: domain Description: Phage_int_SAM_5 Location: 476-761 bp Feature: domain Description: INTN1_C_like Location: 800-1274 bp Feature: domain Description: INTN1_C_like Location: 800-1274 bp Feature: gene Location: 1363-1857 bp Feature: gene Location: 1859-3154 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2075-2666 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2075-2666 bp Feature: gene Location: 3208-3393 bp Feature: gene Location: 3588-10376 bp Feature: domain Description: Laminin_G_3 Location: 6024-6405 bp Feature: domain Description: Laminin_G_3 Location: 6024-6405 bp Feature: domain Description: CotH Location: 6669-7713 bp Feature: domain Description: CotH Location: 6669-7713 bp Feature: domain Description: LRR_AMN1 Location: 8130-8595 bp Feature: domain Description: LRR_AMN1 Location: 813 0-8595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034)

Seq: MNQU01000044.1 Bacteroides uniformis isolate 45_41 Ley3_66761_scaffold_2352, whole genome shotgun sequence (19803 bp)
Overview 1 RT 1: 5014-9853 bp Neighborhood of RT #1 [5014, 9853] RVT-DGRs Feature: gene Location: 5014-6036 bp Feature: gene Location: 6057-7376 bp Feature: gene Location: 7893-8708 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8226-8553 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8226-8553 bp Feature: gene Location: 9089-9436 bp Feature: gene Location: 9458-9853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: MNQU01000100.1 Bacteroides uniformis isolate 45_41 Ley3_66761_scaffold_13356, whole genome shotgun sequence (2539 bp)
Overview 1 RT 1: 110-1892 bp Neighborhood of RT #1 [110, 1921] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 110-1921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1196 bp Feature: domain Description: Intron_maturas2 Location: 1271-1586 bp Feature: domain Description: Intron_maturas2 Location: 1271-15 86 bp Feature: domain Description: HNHc Note: nucleases Location: 1742-1892 bp Feature: domain Description: HNHc Note: nucleases Location: 1742-1892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)