myRT

myRT report for GCA_001915605.1_ASM191560v1

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Seq: MNQV01000236.1 Bacteroides vulgatus isolate 42_262 Ley3_66761_scaffold_1320, whole genome shotgun sequence (34855 bp)
Overview 1 RT 1: 5252-9185 bp Neighborhood of RT #1 [5252, 9185] RVT-UG27 Feature: gene Location: 5252-5899 bp Feature: gene Location: 5913-6581 bp Feature: gene Location: 6574-7836 bp Ori: OKZ43634.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 6766-7402 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 6766-7402 bp Feature: gene Location: 8159-8656 bp Feature: gene Location: 8706-9185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: MNQV01000214.1 Bacteroides vulgatus isolate 42_262 Ley3_66761_scaffold_447, whole genome shotgun sequence (73358 bp)
Overview 1 RT 1: 37233-45894 bp Neighborhood of RT #1 [37233, 45899] Response_reg RVT-Retrons HelD UvrD UvrD Feature: gene Location: 37233-39455 bp Ori: OKZ45320.1 Feature: domain Description: Response_reg Location: 38553-38790 bp Feature: domain Description: Response_reg Location: 38553-38790 bp Feature: gene Location: 39460-40638 bp Feature: gene Location: 40622-42349 bp Ori: OKZ45322.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40802-41396 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40802 -41396 bp Feature: gene Location: 42870-44591 bp Feature: gene Location: 44595-45899 bp Ori: OKZ45324.1 Feature: domain Description: HelD Location: 44637-44727 bp Feature: domain Description: HelD Location: 44637-4472 7 bp Feature: domain Description: UvrD Location: 45099-45630 bp Feature: domain Description: UvrD Location: 45099-45630 bp Feature: domain Description: UvrD Location: 45696-45894 bp Feature: domain Description: UvrD Location: 45696-45894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Response_reg (pfam00072), RVT-Retrons, HelD (COG3973), UvrD (COG0210)

Seq: MNQV01000087.1 Bacteroides vulgatus isolate 42_262 Ley3_66761_scaffold_4299, whole genome shotgun sequence (24219 bp)
Overview 1 RT 1: 16309-20268 bp Neighborhood of RT #1 [16309, 20268] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 16309-16605 bp Ori: OKZ53593.1 Feature: domain Description: DUF4133 Location: 16351-16528 bp Feature: domain Description: DUF413 3 Location: 163 51-16528 bp Feature: gene Location: 16618-16800 bp Ori: OKZ53594.1 Feature: domain Description: DUF4134 Location: 16687-16786 bp Feature: domain Description: DUF413 4 Location: 16687-16786 bp Feature: gene Location: 16825-18636 bp Ori: OKZ53595.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17089-17911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17089-17911 bp Feature: domain Description: Intron_maturas2 Location: 18100-18310 bp Feature: domain Description: Intron_maturas2 Location: 18100-183 10 bp Feature: domain Description: HNHc Note: nucleases Location: 18460-18565 bp Feature: domain Description: HNHc Note: nucleases Location: 18460-18565 bp Feature: gene Location: 19494-19820 bp Ori: OKZ53596.1 Feature: domain Description: DUF4134 Location: 19515-19806 bp Feature: domain Description: DUF413 4 Location: 19515-19806 bp Feature: gene Location: 19822-20268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: MNQV01000231.1 Bacteroides vulgatus isolate 42_262 Ley3_66761_scaffold_1914, whole genome shotgun sequence (24810 bp)
Overview 1 RT 1: 20598-24571 bp Neighborhood of RT #1 [20598, 24591] Hypoth_Ymh RVT-AbiP2 COG1373 Feature: gene Location: 20598-20864 bp Feature: gene Location: 20937-21731 bp Ori: OKZ43917.1 Feature: domain Description: Hypoth_Ymh Location: 21354-21708 bp Feature: domain Description: Hypoth_Ymh Location: 21354 -21708 bp Feature: gene Location: 21756-23279 bp Ori: OKZ43918.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 22185-22641 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 22185-2264 1 bp Feature: gene Location: 23338-24591 bp Ori: OKZ43921.1 Feature: domain Description: COG1373 Location: 23341-24571 bp Feature: domain Description: COG1373 Location: 2334 1-24 571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hypoth_Ymh (pfam09509), RVT-AbiP2, COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: MNQV01000116.1 Bacteroides vulgatus isolate 42_262 Ley3_66761_scaffold_5356, whole genome shotgun sequence (7279 bp)
Overview 1 RT 1: 1877-6964 bp Neighborhood of RT #1 [1877, 6999] DUF4988 RVT-GII DUF2582 Feature: gene Location: 1877-4966 bp Ori: OKZ52446.1 Feature: domain Description: DUF4988 Location: 1958-2423 bp Feature: domain Description: DUF4988 Location: 195 8-2423 bp Feature: gene Location: 5473-5703 bp Feature: gene Location: 5716-5964 bp Ori: OKZ52448.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5806-5959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 806-5 95 9 bp Feature: gene Location: 6775-6999 bp Ori: OKZ52449.1 Feature: domain Description: DUF2582 Location: 6778-6964 bp Feature: domain Description: DUF25 82 Location: 6778-6964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4988 (pfam16378), RVT-GII, DUF2582 (pfam10771)

Seq: MNQV01000063.1 Bacteroides vulgatus isolate 42_262 Ley3_66761_scaffold_2280, whole genome shotgun sequence (57328 bp)
Overview 1 RT 1: 33789-38356 bp Neighborhood of RT #1 [33789, 38356] DUF1738 RVT-GII Intron_maturas2 Feature: gene Location: 33789-34307 bp Ori: OKZ54292.1 Feature: domain Description: DUF1738 Location: 33843-34260 bp Feature: domain Description: DUF1738 Location: 33843-3426 0 bp Feature: gene Location: 34329-34891 bp Feature: gene Location: 34845-36656 bp Ori: OKZ54293.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35109-35931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35109-35931 bp Feature: domain Description: Intron_maturas2 Location: 36072-36312 bp Feature: domain Description: Intron_maturas2 Location: 36 072-36 312 bp Feature: gene Location: 36646-37930 bp Feature: gene Location: 37985-38356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1738 (pfam08401), RVT-GII, Intron_maturas2 (pfam01348)

Seq: MNQV01000077.1 Bacteroides vulgatus isolate 42_262 Ley3_66761_scaffold_4047, whole genome shotgun sequence (15697 bp)
Overview 1 RT 1: 5348-9816 bp Neighborhood of RT #1 [5348, 9816] Prophage_tail Prophage_tail RVT-DGRs Feature: gene Location: 5348-7531 bp Ori: OKZ53860.1 Feature: domain Description: Prophage_tail Location: 5657-5882 bp Feature: domain Description: Prophage_tail Location: 5657 -5882 bp Feature: domain Description: Prophage_tail Location: 6578-6821 bp Feature: domain Description: Prophage_tail Location: 657 8-6821 bp Feature: gene Location: 7718-8131 bp Feature: gene Location: 8115-9140 bp Ori: OKZ53862.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8325-8934 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8325-8934 bp Feature: gene Location: 9159-9419 bp Feature: gene Location: 9448-9816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prophage_tail (pfam06605), RVT-DGRs