myRT

myRT report for GCA_001916065.1_ASM191606v1

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Seq: MNRS01000014.1 Clostridium sp. 28_17 Ley3_66761_scaffold_638, whole genome shotgun sequence (93595 bp)
Overview 1 RT 1: 74154-76585 bp Neighborhood of RT #1 [74154, 76585] RVT-Retrons Feature: gene Location: 74154-74384 bp Feature: gene Location: 74445-74681 bp Feature: gene Location: 74725-75396 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74734-75154 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74734-751 54 bp Feature: gene Location: 75507-75752 bp Feature: gene Location: 75989-76585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: MNRS01000018.1 Clostridium sp. 28_17 Ley3_66761_scaffold_162, whole genome shotgun sequence (235032 bp)
Overview 1 RT 1: 208477-214899 bp Neighborhood of RT #1 [208477, 214970] VirB4_CagE TraC-F-type RVT-GII HNHc TraC-F-type CbiA Feature: gene Location: 208477-209088 bp Feature: domain Description: VirB4_CagE Location: 208534-208933 bp Feature: domain Description: VirB4_CagE Location: 2 08534-2 08933 bp Feature: gene Location: 209587-210267 bp Feature: domain Description: TraC-F-type Location: 209707-210223 bp Feature: domain Description: TraC-F-type Location: 2 09707-2 102 2 3 bp Feature: gene Location: 210988-212808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211285-211981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 112 85-2 11981 bp Feature: domain Description: HNHc Note: nucleases Location: 212587-212692 bp Feature: domain Description: HNHc Note: nucleases Location: 2 12 587-2 12 692 bp Feature: gene Location: 212999-213886 bp Feature: domain Description: TraC-F-type Location: 213056-213764 bp Feature: domain Description: TraC-F-type Location: 2 13056-2 13764 bp Feature: gene Location: 213861-214970 bp Feature: domain Description: CbiA Location: 214332-214899 bp Feature: domain Description: CbiA Location: 2 14332 -2 14899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507), CbiA (pfam01656)

Seq: MNRS01000010.1 Clostridium sp. 28_17 Ley3_66761_scaffold_4759, whole genome shotgun sequence (8514 bp)
Overview 1 RT 1: 1-2575 bp Neighborhood of RT #1 [1, 2793] RVT-DGRs Avd_like MutS_I Feature: gene Location: 1-286 bp Feature: gene Location: 934-2034 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1144-1762 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1144-1762 bp Feature: gene Location: 2019-2378 bp Feature: domain Description: Avd_like Location: 2049-2367 bp Feature: domain Description: Avd_like Location: 2049-23 67 bp Feature: gene Location: 2365-2793 bp Feature: domain Description: MutS_I Location: 2380-2575 bp Feature: domain Description: MutS_I Location: 23 80-2575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), MutS_I (pfam01624), RVT-DGRs