myRT

myRT report for GCA_001916795.1_ASM191679v1

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Seq: MNTC01000120.1 Firmicutes bacterium CAG:552_39_19 Ley3_66761_scaffold_94, whole genome shotgun sequence (218901 bp)
Overview 1 RT 1: 177409-180994 bp Neighborhood of RT #1 [177409, 181104] Mtd_N RVT-DGRs Phage_holin_6_1 Feature: gene Location: 177409-177726 bp Ori: OLA43145.1 Feature: domain Description: Mtd_N Location: 177442-177553 bp Feature: domain Description: Mtd_N Location: 1 77442-1 77553 bp Feature: gene Location: 177730-178776 bp Feature: gene Location: 179070-180251 bp Ori: OLA43147.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 179322-179907 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 79322-1 79907 bp Feature: gene Location: 180359-180694 bp Feature: gene Location: 180703-181104 bp Ori: OLA43149.1 Feature: domain Description: Phage_holin_6_1 Location: 180721-180994 bp Feature: domain Description: Phage_holin_6_1 Location: 1 80721 -1 80994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mtd_N (pfam18454), RVT-DGRs, Phage_holin_6_1 (pfam09682)

Seq: MNTC01000114.1 Firmicutes bacterium CAG:552_39_19 Ley3_66761_scaffold_754, whole genome shotgun sequence (100457 bp)
Overview 1 RT 1: 14104-17632 bp Neighborhood of RT #1 [14104, 17721] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 Feature: gene Location: 14104-15246 bp Ori: OLA44149.1 Feature: domain Description: PHA00653 Location: 14245-15244 bp Feature: domain Description: PHA00653 Location: 142 45-152 44 bp Feature: gene Location: 15287-15643 bp Ori: OLA44150.1 Feature: domain Description: Avd_like Location: 15317-15623 bp Feature: domain Description: Avd_like Location: 15317-1562 3 bp Feature: gene Location: 15970-17032 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16210-16501 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 162 10-16501 bp Feature: gene Location: 17057-17236 bp Feature: gene Location: 17233-17721 bp Ori: OLA44152.1 Feature: domain Description: Phage_holin_4_1 Location: 17272-17632 bp Feature: domain Description: Phage_holin_4_1 Location: 172 72 -17632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: MNTC01000074.1 Firmicutes bacterium CAG:552_39_19 Ley3_66761_scaffold_12837, whole genome shotgun sequence (2643 bp)
Overview 1 RT 1: 1-2446 bp Neighborhood of RT #1 [1, 2446] SEC-C PRK05716 RVT-GII GIIM Feature: gene Location: 1-593 bp Feature: domain Description: SEC-C Location: 22-70 bp Feature: domain Description: SEC-C Location: 22-70 bp Feature: domain Description: PRK05716 Location: 130-589 bp Feature: domain Description: PRK05716 Location: 13 0-589 bp Feature: gene Location: 761-2044 bp Ori: OLA45858.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 974-1589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 974-1589 bp Feature: domain Description: GIIM Note: maturase Location: 1652-1880 bp Feature: domain Description: GIIM Note: maturase Location: 1652-1880 bp Feature: gene Location: 2261-2446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SEC-C (pfam02810), PRK05716 (methionine aminopeptidase; Validated), RVT-GII, GIIM (pfam08388)

Seq: MNTC01000076.1 Firmicutes bacterium CAG:552_39_19 Ley3_66761_scaffold_13094, whole genome shotgun sequence (7216 bp)
Overview 1 RT 1: 3494-6759 bp Neighborhood of RT #1 [3494, 6761] RVT-Retrons DEXHc_UvrB DEXHc_UvrB Feature: gene Location: 3494-4021 bp Feature: gene Location: 4080-4286 bp Feature: gene Location: 4528-6210 bp Ori: OLA45677.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4648-5248 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 64 8-524 8 bp Feature: gene Location: 6570-6761 bp Ori: OLA45678.1 Feature: domain Description: DEXHc_UvrB Location: 6582-6633 bp Feature: domain Description: DEXHc_UvrB Location: 6582-6633 bp Feature: domain Description: DEXHc_UvrB Location: 6636-6759 bp Feature: domain Description: DEXHc_UvrB Location: 6636-6759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DEXHc_UvrB (cd17916)

Seq: MNTC01000037.1 Firmicutes bacterium CAG:552_39_19 Ley3_66761_scaffold_6639, whole genome shotgun sequence (5604 bp)
Overview 1 RT 1: 294-4728 bp Neighborhood of RT #1 [294, 4728] RVT-UNC Feature: gene Location: 294-1295 bp Feature: gene Location: 1309-2370 bp Feature: gene Location: 2445-3740 bp Ori: OLA47470.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 2823-3303 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2823-3303 bp Feature: gene Location: 3919-4236 bp Feature: gene Location: 4504-4728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3/RVT-UG28/RVT-UG17/RVT-UG26(RVT-UNC)

Seq: MNTC01000062.1 Firmicutes bacterium CAG:552_39_19 Ley3_66761_scaffold_10056, whole genome shotgun sequence (3606 bp)
Overview 1 RT 1: 1-3592 bp Neighborhood of RT #1 [1, 3592] AAA_10 RVT-GII AAA_10 Feature: gene Location: 1-362 bp Feature: domain Description: AAA_10 Location: 4-361 bp Feature: domain Description: AAA_10 Location: 4-36 1 bp Feature: gene Location: 580-2406 bp Ori: OLA46395.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880-1579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880-1579 bp Feature: gene Location: 3103-3384 bp Feature: domain Description: AAA_10 Location: 3163-3349 bp Feature: domain Description: AAA_10 Location: 316 3-3349 bp Feature: gene Location: 3335-3592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII