myRT

myRT report for GCA_001929405.1_ASM192940v1

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Seq: KV880769.1 Herbaspirillum sp. WT00C genomic scaffold Scaffold1, whole genome shotgun sequence (6076317 bp)
Overview 1 RT 1: 1093839-1099257 bp 2 RT 2: 2583052-2588688 bp 3 RT 3: 3062386-3068309 bp 4 RT 4: 3414380-3420737 bp 5 RT 5: 3657971-3665147 bp 6 RT 6: 3942719-3949450 bp 7 RT 7: 5755806-5762275 bp Neighborhood of RT #1 [1093839, 1099257] couple_hipB RVT-G2L Neighborhood of RT #2 [2583052, 2588882] adh_fam_1 AAA_21 RVT-Retrons TlyC HipB Neighborhood of RT #3 [3062386, 3068371] GGDEF LpxO2 RVT-GII GIIM PRK00711 Neighborhood of RT #4 [3414380, 3420737] TM_PBP1_LivM_like LivG LivF RVT-GII GIIM MhpC Neighborhood of RT #5 [3657971, 3665149] Tra5 rve RVT-GII GIIM PHA02517 PRK15048 Neighborhood of RT #6 [3942719, 3949461] LysR COG4320 RVT-GII GIIM SpoT rpoZ Neighborhood of RT #7 [5755806, 5762286] PRK14019 PRK11815 RVT-GII GIIM TypA Feature: gene Location: 1093839-1094132 bp Feature: domain Description: couple_hipB Location: 1093857-1094025 bp Feature: domain Description: couple_hipB Location: 1 093857-1 094025 bp Feature: gene Location: 1095567-1096307 bp Feature: gene Location: 1096638-1097834 bp Feature: RT Description: RVT-G2L Note: G2L RT Location: 1096857-1097517 bp Feature: RT Description: RVT-G2L Note: G2L RT Location: 1 096857-1 09751 7 bp Feature: gene Location: 1097834-1098448 bp Feature: gene Location: 1098700-1099257 bp Feature: gene Location: 2583052-2584053 bp Feature: domain Description: adh_fam_1 Location: 2583088-2584051 bp Feature: domain Description: adh_fam_1 Location: 2583088-2584051 bp Feature: gene Location: 2584087-2585472 bp Feature: domain Description: AAA_21 Location: 2584201-2584690 bp Feature: domain Description: AAA_21 Location: 2584201 -2584690 bp Feature: gene Location: 2585610-2586611 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2585733-2586285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2585733-2586285 bp Feature: gene Location: 2587070-2588392 bp Feature: domain Description: TlyC Location: 2587073-2588378 bp Feature: domain Description: TlyC Location: 2587073-2588378 bp Feature: gene Location: 2588481-2588882 bp Feature: domain Description: HipB Location: 2588505-2588688 bp Feature: domain Description: HipB Location: 2588505-2588688 bp Feature: gene Location: 3062386-3063465 bp Feature: domain Description: GGDEF Location: 3062872-3063391 bp Feature: domain Description: GGDEF Location: 3062872-3063391 bp Feature: gene Location: 3063967-3064983 bp Feature: domain Description: LpxO2 Location: 3064102-3064960 bp Feature: domain Description: LpxO2 Location: 30641 02-3064960 bp Feature: gene Location: 3065247-3066617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3065583-3066195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3065583-30661 95 bp Feature: domain Description: GIIM Note: maturase Location: 3066252-3066459 bp Feature: domain Description: GIIM Note: maturase Location: 3066252-3066459 bp Feature: gene Location: 3066849-3067055 bp Feature: gene Location: 3067061-3068371 bp Feature: domain Description: PRK00711 Location: 3067064-3068309 bp Feature: domain Description: PRK0071 1 Location: 3067064-3068309 bp Feature: gene Location: 3414380-3416347 bp Feature: domain Description: TM_PBP1_LivM_like Location: 3414485-3415433 bp Feature: domain Description: TM_PBP1 _LivM_like Location: 341 4485-341 5433 bp Feature: domain Description: LivG Location: 3415550-3416300 bp Feature: domain Description: LivG Location: 341 5550-341 6300 bp Feature: gene Location: 3416350-3417078 bp Feature: domain Description: LivF Location: 3416353-3417061 bp Feature: domain Description: LivF Location: 341 6353-341 7061 bp Feature: gene Location: 3417606-3418976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3417942-3418554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341 7942-341 8554 bp Feature: domain Description: GIIM Note: maturase Location: 3418611-3418818 bp Feature: domain Description: GIIM Note: maturase Location: 341 861 1 -341 881 8 bp Feature: gene Location: 3418999-3419910 bp Feature: domain Description: MhpC Location: 3419137-3419908 bp Feature: domain Description: MhpC Location: 341 91 37-341 9908 bp Feature: gene Location: 3420258-3420737 bp Feature: gene Location: 3657971-3658810 bp Feature: domain Description: Tra5 Location: 3658013-3658769 bp Feature: domain Description: Tra5 Location: 365801 3-3658769 bp Feature: gene Location: 3659242-3659883 bp Feature: domain Description: rve Location: 3659431-3659764 bp Feature: domain Description: rve Location: 3659431 -3659764 bp Feature: gene Location: 3660582-3661823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3660780-3661437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3660780-3661 437 bp Feature: domain Description: GIIM Note: maturase Location: 3661515-3661737 bp Feature: domain Description: GIIM Note: maturase Location: 3661 51 5-3661 737 bp Feature: gene Location: 3661834-3662199 bp Feature: domain Description: PHA02517 Location: 3661903-3662095 bp Feature: domain Description: PHA0251 7 Location: 3661 903-3662095 bp Feature: gene Location: 3663938-3665149 bp Feature: domain Description: PRK15048 Location: 3664472-3665147 bp Feature: domain Description: PRK1 5048 Location: 3664472-36651 47 bp Feature: gene Location: 3942719-3943687 bp Feature: domain Description: LysR Location: 3942725-3943601 bp Feature: domain Description: LysR Location: 3942725-3943601 bp Feature: gene Location: 3943695-3944921 bp Feature: domain Description: COG4320 Location: 3943770-3944910 bp Feature: domain Description: COG4320 Location: 3943770-394491 0 bp Feature: gene Location: 3945159-3946529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3945495-3946107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3945495-39461 07 bp Feature: domain Description: GIIM Note: maturase Location: 3946164-3946371 bp Feature: domain Description: GIIM Note: maturase Location: 39461 64-3946371 bp Feature: gene Location: 3946961-3949222 bp Feature: domain Description: SpoT Location: 3947078-3949211 bp Feature: domain Description: SpoT Location: 3947078-394921 1 bp Feature: gene Location: 3949258-3949461 bp Feature: domain Description: rpoZ Location: 3949261-3949450 bp Feature: domain Description: rpoZ Location: 3949261 -3949450 bp Feature: gene Location: 5755806-5756927 bp Feature: domain Description: PRK14019 Location: 5755809-5756919 bp Feature: domain Description: PRK1 401 9 Location: 5755809-575691 9 bp Feature: gene Location: 5757003-5758301 bp Feature: domain Description: PRK11815 Location: 5757297-5758293 bp Feature: domain Description: PRK1 1 81 5 Location: 5757297-5758293 bp Feature: gene Location: 5758217-5759587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5758553-5759165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5758553-57591 65 bp Feature: domain Description: GIIM Note: maturase Location: 5759222-5759429 bp Feature: domain Description: GIIM Note: maturase Location: 5759222-5759429 bp Feature: gene Location: 5760145-5760273 bp Feature: gene Location: 5760445-5762286 bp Feature: domain Description: TypA Location: 5760463-5762275 bp Feature: domain Description: TypA Location: 5760463-5762275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT couple_hipB (TIGR03070), RVT-G2L, adh_fam_1 (TIGR02817), AAA_21 (pfam13304), RVT-Retrons, TlyC (COG1253), HipB (COG1396), GGDEF (TIGR00254), LpxO2 (COG3555), RVT-GII
GIIM (pfam08388), PRK00711 (D-amino acid dehydrogenase), TM_PBP1_LivM_like (cd06581), LivG (COG0411), LivF (COG0410), MhpC (COG0596), Tra5 (COG2801), rve (pfam00665), PHA02517 (putative transposase OrfB; Reviewed), PRK15048 (methyl-accepting chemotaxis protein II; Provisional)
LysR (COG0583), COG4320 (Uncharacterized conserved protein, DUF2252 family ), SpoT (COG0317), rpoZ (TIGR00690), PRK14019 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II), PRK11815 (tRNA dihydrouridine(20/20a) synthase DusA), TypA (COG1217)