myRT

myRT report for GCA_001929665.1_ASM192966v1

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Seq: LQEJ01000072.1 Mannheimia haemolytica strain 2543MH isolate swab isolate 1 contig_72, whole genome shotgun sequence (37643 bp)
Overview 1 RT 1: 15525-27328 bp Neighborhood of RT #1 [15525, 27333] rpoB PRK00566 RVT-UG2 PRK00062 Feature: gene Location: 15525-19550 bp Feature: domain Description: rpoB Location: 15549-19539 bp Feature: domain Description: rpoB Location: 1 5549-1 9539 bp Feature: gene Location: 19813-24096 bp Feature: domain Description: PRK00566 Location: 19849-23938 bp Feature: domain Description: PRK00566 Location: 1 9849-23938 bp Feature: gene Location: 24491-25801 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24686-25505 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24686-25505 bp Feature: gene Location: 25804-25986 bp Feature: gene Location: 26053-27333 bp Feature: domain Description: PRK00062 Location: 26059-27328 bp Feature: domain Description: PRK00062 Location: 26059-27328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpoB (TIGR02013), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-UG2, PRK00062 (glutamate-1-semialdehyde 2,1-aminomutase)

Seq: LQEJ01000089.1 Mannheimia haemolytica strain 2543MH isolate swab isolate 1 contig_89, whole genome shotgun sequence (134313 bp)
Overview 1 RT 1: 47605-52003 bp Neighborhood of RT #1 [47605, 52003] rplM rpsI RVT_N RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 47605-48033 bp Feature: domain Description: rplM Location: 47608-48031 bp Feature: domain Description: rplM Location: 47608-48031 bp Feature: gene Location: 48050-48445 bp Feature: domain Description: rpsI Location: 48062-48443 bp Feature: domain Description: rpsI Location: 48062 -48443 bp Feature: gene Location: 50127-50657 bp Feature: domain Description: RVT_N Location: 50196-50439 bp Feature: domain Description: RVT_N Location: 50196-50439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50484-50652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50484-50652 bp Feature: gene Location: 50772-51236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50778-51144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50778-51144 bp Feature: gene Location: 51233-51847 bp Feature: domain Description: GIIM Note: maturase Location: 51245-51428 bp Feature: domain Description: GIIM Note: maturase Location: 512 45-5142 8 bp Feature: domain Description: HNHc Note: nucleases Location: 51656-51812 bp Feature: domain Description: HNHc Note: nucleases Location: 51656-51812 bp Feature: gene Location: 51869-52003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rplM (PRK09216), rpsI (PRK00132), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)