myRT

myRT report for GCA_001929715.1_ASM192971v1

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Seq: LQEM01000075.1 Mannheimia haemolytica strain 2597MH isolate swab isolate 1 contig_75, whole genome shotgun sequence (37646 bp)
Overview 1 RT 1: 15528-27331 bp Neighborhood of RT #1 [15528, 27336] rpoB PRK00566 RVT-UG2 PRK00062 Feature: gene Location: 15528-19553 bp Feature: domain Description: rpoB Location: 15552-19542 bp Feature: domain Description: rpoB Location: 1 5552-1 9542 bp Feature: gene Location: 19816-24099 bp Feature: domain Description: PRK00566 Location: 19852-23941 bp Feature: domain Description: PRK00566 Location: 1 9852-23941 bp Feature: gene Location: 24494-25804 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24689-25508 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24689-25508 bp Feature: gene Location: 25807-25989 bp Feature: gene Location: 26056-27336 bp Feature: domain Description: PRK00062 Location: 26062-27331 bp Feature: domain Description: PRK00062 Location: 26062-27331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpoB (TIGR02013), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-UG2, PRK00062 (glutamate-1-semialdehyde 2,1-aminomutase)

Seq: LQEM01000088.1 Mannheimia haemolytica strain 2597MH isolate swab isolate 1 contig_88, whole genome shotgun sequence (70535 bp)
Overview 1 RT 1: 1230-5628 bp Neighborhood of RT #1 [1230, 5628] rplM rpsI RVT_N RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 1230-1658 bp Feature: domain Description: rplM Location: 1233-1656 bp Feature: domain Description: rplM Location: 12 33-1656 bp Feature: gene Location: 1675-2070 bp Feature: domain Description: rpsI Location: 1687-2068 bp Feature: domain Description: rpsI Location: 1687-2 068 bp Feature: gene Location: 3752-4282 bp Feature: domain Description: RVT_N Location: 3821-4064 bp Feature: domain Description: RVT_N Location: 382 1-4064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4109-4277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4109-42 77 bp Feature: gene Location: 4397-4861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4403-4769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4403-4769 bp Feature: gene Location: 4858-5472 bp Feature: domain Description: GIIM Note: maturase Location: 4870-5053 bp Feature: domain Description: GIIM Note: maturase Location: 4870-5053 bp Feature: domain Description: HNHc Note: nucleases Location: 5281-5437 bp Feature: domain Description: HNHc Note: nucleases Location: 52 81-5437 bp Feature: gene Location: 5494-5628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rplM (PRK09216), rpsI (PRK00132), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)