myRT

myRT report for GCA_001929965.1_ASM192996v1

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Seq: LQDD01000080.1 Mannheimia haemolytica strain 2165MH isolate swab isolate 1 contig_80, whole genome shotgun sequence (37663 bp)
Overview 1 RT 1: 15545-27348 bp Neighborhood of RT #1 [15545, 27353] rpoB PRK00566 RVT-UG2 PRK00062 Feature: gene Location: 15545-19570 bp Feature: domain Description: rpoB Location: 15569-19559 bp Feature: domain Description: rpoB Location: 1 5569-1 9559 bp Feature: gene Location: 19833-24116 bp Feature: domain Description: PRK00566 Location: 19869-23958 bp Feature: domain Description: PRK00566 Location: 1 9869-23958 bp Feature: gene Location: 24511-25821 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24706-25525 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24706-25525 bp Feature: gene Location: 25824-26006 bp Feature: gene Location: 26073-27353 bp Feature: domain Description: PRK00062 Location: 26079-27348 bp Feature: domain Description: PRK00062 Location: 26079-27348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpoB (TIGR02013), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-UG2, PRK00062 (glutamate-1-semialdehyde 2,1-aminomutase)

Seq: LQDD01000098.1 Mannheimia haemolytica strain 2165MH isolate swab isolate 1 contig_98, whole genome shotgun sequence (131438 bp)
Overview 1 RT 1: 47582-51980 bp Neighborhood of RT #1 [47582, 51980] rplM rpsI RVT_N RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 47582-48010 bp Feature: domain Description: rplM Location: 47585-48008 bp Feature: domain Description: rplM Location: 47585-48008 bp Feature: gene Location: 48027-48422 bp Feature: domain Description: rpsI Location: 48039-48420 bp Feature: domain Description: rpsI Location: 48039-4842 0 bp Feature: gene Location: 50104-50634 bp Feature: domain Description: RVT_N Location: 50173-50416 bp Feature: domain Description: RVT_N Location: 50173-50416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50461-50629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50461-5062 9 bp Feature: gene Location: 50749-51213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50755-51121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50755-5112 1 bp Feature: gene Location: 51210-51824 bp Feature: domain Description: GIIM Note: maturase Location: 51222-51405 bp Feature: domain Description: GIIM Note: maturase Location: 512 2 2 -51405 bp Feature: domain Description: HNHc Note: nucleases Location: 51633-51789 bp Feature: domain Description: HNHc Note: nucleases Location: 51633-51789 bp Feature: gene Location: 51846-51980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rplM (PRK09216), rpsI (PRK00132), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)